RNA id: TU65644


Basic Information

Item Value
RNA id TU65644
length 303
lncRNA type intronic
GC content 0.35
exon number 1
gene id G57626
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 11512902 ~ 11513204 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGACATCTTGGAAGTGACGTCAAATGACGCGAGGTCGGGGTTGAGGTCGACACGTCTCCAGCCTTCGCCCCGAGTTCACACACCGGTTTTAAAACAATCTAAATTAAATCTAATAAATTTAGAACAGAATAAGAGAAATATATGCCAAGACTTGGTTTTATCAACCAGGGGAAAAAAGCCGTTACATACTCTACCATTCAAAAGTTTTTCGTCAATTTTTTTTTTTTTTTTTTTTTAAGAAATACTTTTATTCAGCCAGCATGCATTAAATTGATCAAAAGTGACATTAAAGACATTTATAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65636 lncRNA upstream 45378 11467265 ~ 11467524 (+) True G57618
TU65634 lncRNA upstream 48044 11464649 ~ 11464858 (+) True G57616
TU65633 lncRNA upstream 48682 11463925 ~ 11464220 (+) True G57615
TU65607 lncRNA upstream 81265 11431344 ~ 11431637 (+) True G57589
TU65585 lncRNA upstream 115563 11397003 ~ 11397339 (+) True G57567
TU65624 lncRNA downstream 17593 11530797 ~ 11532780 (+) True G57606
TU65672 lncRNA downstream 107256 11620460 ~ 11655364 (+) True G57654
TU65693 lncRNA downstream 150818 11664022 ~ 11666325 (+) True G57665
TU65803 lncRNA downstream 233173 11746377 ~ 11757663 (+) True G57772
TU65818 lncRNA downstream 264635 11777839 ~ 11778105 (+) True G57786
CI01000009_11434018_11455253.mRNA mRNA upstream 57267 11433792 ~ 11455635 (+) True CI01000009_11434018_11455253
CI01000009_11342784_11347580.mRNA mRNA upstream 164075 11342784 ~ 11348827 (+) True CI01000009_11342784_11347580
CI01000009_10644080_10691030.mRNA mRNA upstream 820852 10644080 ~ 10692050 (+) True CI01000009_10644080_10691030
CI01000009_10583435_10617169.mRNA mRNA upstream 895733 10583435 ~ 10617169 (+) True CI01000009_10583435_10617169
CI01000009_10555555_10560050.mRNA mRNA upstream 952504 10554350 ~ 10560398 (+) True CI01000009_10555555_10560050
CI01000009_11669960_11702667.mRNA mRNA downstream 156756 11669960 ~ 11703539 (+) True CI01000009_11669960_11702667
CI01000009_11711277_11714191.mRNA mRNA downstream 197956 11711160 ~ 11714694 (+) True CI01000009_11711277_11714191
CI01000009_11761868_11765848.mRNA mRNA downstream 248402 11761606 ~ 11766331 (+) False CI01000009_11761868_11765848
CI01000009_11769442_11773619.mRNA mRNA downstream 256238 11769442 ~ 11773619 (+) True CI01000009_11769442_11773619
CI01000009_11789703_11791511.mRNA mRNA downstream 276499 11789703 ~ 11791736 (+) True CI01000009_11789703_11791511
TU64139 other upstream 1656315 9853359 ~ 9853515 (+) True G56323
TU63847 other upstream 2382616 9129300 ~ 9130286 (+) True G56100
TU61103 other upstream 5264510 6245564 ~ 6248392 (+) True G53651
TU61110 other upstream 5580101 5860302 ~ 5860756 (+) True G53655
TU60791 other upstream 5973848 5535245 ~ 5538095 (+) False G53388
TU65813 other downstream 247582 11760786 ~ 11760858 (+) True G57782
TU65844 other downstream 420738 11933942 ~ 11935251 (+) False G57811
TU65845 other downstream 420738 11933942 ~ 11935251 (+) False G57811
TU65846 other downstream 420738 11933942 ~ 11935251 (+) True G57811
TU65746 other downstream 919354 12432558 ~ 12433084 (+) False CI01000009_12432736_12435509

Expression Profile