RNA id: TU67093


Basic Information

Item Value
RNA id TU67093
length 459
lncRNA type intronic
GC content 0.37
exon number 1
gene id G58930
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 11517437 ~ 11517895 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGTTGAAATCCGATGGCTCAGTGAGGCCTGCATAGCCAGCAATGGCATTTCCTCTCTCAAGATCCATTAATGTACTAAAAACATATTTAAATCAGTTCATGTGAGTACAGTGGTTCAATATTAATATTATAAAGCGACGAGAATATTTTTTCATTAAGCTTCGGAGCGTTATGAATCTTTTGTGTCGAATCATGATTCGGATCGCGTGTCAAACTGCCAAACTGCTGAAATCACGTGACTTTGGCGCTCCGAACCGCTGATTCGACACAAAAGATTCACAACGCTCCAAAGCTTCATGAAGCAGTGTTTTGAAATCGGCCATCACTGTATAAGTCGTTATTTTGTTTTTTTGGCGCACCAAAAATATTCTTGTCGCTTTATAATATTAATATTGAACCACTGTACTCACATGAACTGATTTAAATATGTTTTTAGTACATTAATGGATCTTGAGAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67090 lncRNA downstream 1599 11515512 ~ 11515838 (-) True G58927
TU67089 lncRNA downstream 2356 11514766 ~ 11515081 (-) True G58926
TU67088 lncRNA downstream 3302 11513631 ~ 11514135 (-) True G58925
TU67087 lncRNA downstream 4756 11512209 ~ 11512681 (-) True G58924
TU67086 lncRNA downstream 5408 11511801 ~ 11512029 (-) True G58923
TU67094 lncRNA upstream 2416 11520311 ~ 11520618 (-) True G58931
TU67055 lncRNA upstream 184677 11708987 ~ 11709175 (-) True G58893
TU67146 lncRNA upstream 281205 11799100 ~ 11799359 (-) True CI01000009_11792162_11799153
TU67043 lncRNA upstream 285643 11803538 ~ 11810843 (-) False G58885
TU67044 lncRNA upstream 285643 11803538 ~ 11810843 (-) True G58885
CI01000009_11491188_11491908.mRNA mRNA downstream 25436 11490935 ~ 11492001 (-) True CI01000009_11491188_11491908
CI01000009_11255397_11267304.mRNA mRNA downstream 250133 11255397 ~ 11267304 (-) True CI01000009_11255397_11267304
CI01000009_11237437_11237793.mRNA mRNA downstream 279644 11236603 ~ 11237793 (-) True CI01000009_11237437_11237793
CI01000009_11129491_11164618.mRNA mRNA downstream 352610 11129369 ~ 11164827 (-) True CI01000009_11129491_11164618
CI01000009_11116286_11120640.mRNA mRNA downstream 396789 11116286 ~ 11120648 (-) True CI01000009_11116286_11120640
CI01000009_11538058_11566095.mRNA mRNA upstream 20163 11538058 ~ 11566095 (-) True CI01000009_11538058_11566095
CI01000009_11573561_11616345.mRNA mRNA upstream 55553 11573448 ~ 11616345 (-) True CI01000009_11573561_11616345
CI01000009_11660386_11668299.mRNA mRNA upstream 141755 11659650 ~ 11668299 (-) True CI01000009_11660386_11668299
CI01000009_11707091_11707360.mRNA mRNA upstream 187117 11705012 ~ 11707589 (-) False CI01000009_11707091_11707360
CI01000009_11715928_11716422.mRNA mRNA upstream 197353 11715248 ~ 11716422 (-) True CI01000009_11715928_11716422
TU64878 other downstream 2656874 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU63500 other downstream 3089425 8425821 ~ 8428012 (-) True G55814
TU60944 other downstream 6012189 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 7285968 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 8255480 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU67286 other upstream 770322 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 770322 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 2457493 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026
TU67748 other upstream 2515669 14033564 ~ 14037873 (-) True G59490
TU68092 other upstream 3344502 14862397 ~ 14887464 (-) True G59811

Expression Profile