RNA id: TU65693


Basic Information

Item Value
RNA id TU65693
length 213
lncRNA type antisense_over
GC content 0.47
exon number 3
gene id G57665
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 11664022 ~ 11666325 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCAGCATTACTGACGTGGCTGTTAAGTTGTTTAGAAGGACAGGGGCCAAAATAGAGGCATGCCCCTGAGCAGATAAACAGGTGACATTCAATGCTCTGGTCTCCTCATAACCCCAAAACCAACCTCTGTAATAGCCTTGTTTGTCTTTTGAGTACATCAGTCTTTCAATGCACGGTCGTTCATCCACCTTCTCCTCCCATTTCCCATCTGTCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65672 lncRNA upstream 8658 11620460 ~ 11655364 (+) True G57654
TU65624 lncRNA upstream 131242 11530797 ~ 11532780 (+) True G57606
TU65644 lncRNA upstream 150818 11512902 ~ 11513204 (+) True G57626
TU65636 lncRNA upstream 196498 11467265 ~ 11467524 (+) True G57618
TU65634 lncRNA upstream 199164 11464649 ~ 11464858 (+) True G57616
TU65803 lncRNA downstream 80052 11746377 ~ 11757663 (+) True G57772
TU65818 lncRNA downstream 111514 11777839 ~ 11778105 (+) True G57786
TU65819 lncRNA downstream 114004 11780329 ~ 11780567 (+) True G57787
TU65822 lncRNA downstream 120579 11786904 ~ 11787326 (+) True G57789
TU65823 lncRNA downstream 121251 11787576 ~ 11787784 (+) True G57790
CI01000009_11493236_11526914.mRNA mRNA upstream 137108 11493236 ~ 11526914 (+) True CI01000009_11493236_11526914
CI01000009_11434018_11455253.mRNA mRNA upstream 208387 11433792 ~ 11455635 (+) True CI01000009_11434018_11455253
CI01000009_11342784_11347580.mRNA mRNA upstream 315195 11342784 ~ 11348827 (+) True CI01000009_11342784_11347580
CI01000009_10644080_10691030.mRNA mRNA upstream 971972 10644080 ~ 10692050 (+) True CI01000009_10644080_10691030
CI01000009_10583435_10617169.mRNA mRNA upstream 1046853 10583435 ~ 10617169 (+) True CI01000009_10583435_10617169
CI01000009_11669960_11702667.mRNA mRNA downstream 3635 11669960 ~ 11703539 (+) True CI01000009_11669960_11702667
CI01000009_11711277_11714191.mRNA mRNA downstream 44835 11711160 ~ 11714694 (+) True CI01000009_11711277_11714191
CI01000009_11761868_11765848.mRNA mRNA downstream 95281 11761606 ~ 11766331 (+) False CI01000009_11761868_11765848
CI01000009_11769442_11773619.mRNA mRNA downstream 103117 11769442 ~ 11773619 (+) True CI01000009_11769442_11773619
CI01000009_11789703_11791511.mRNA mRNA downstream 123378 11789703 ~ 11791736 (+) True CI01000009_11789703_11791511
TU64139 other upstream 1807435 9853359 ~ 9853515 (+) True G56323
TU63847 other upstream 2533736 9129300 ~ 9130286 (+) True G56100
TU61103 other upstream 5415630 6245564 ~ 6248392 (+) True G53651
TU61110 other upstream 5731221 5860302 ~ 5860756 (+) True G53655
TU60791 other upstream 6124968 5535245 ~ 5538095 (+) False G53388
TU65813 other downstream 94461 11760786 ~ 11760858 (+) True G57782
TU65844 other downstream 267617 11933942 ~ 11935251 (+) False G57811
TU65845 other downstream 267617 11933942 ~ 11935251 (+) False G57811
TU65846 other downstream 267617 11933942 ~ 11935251 (+) True G57811
TU65746 other downstream 766233 12432558 ~ 12433084 (+) False CI01000009_12432736_12435509

Expression Profile