RNA id: TU67233


Basic Information

Item Value
RNA id TU67233
length 219
lncRNA type intronic
GC content 0.37
exon number 1
gene id G59054
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 12104760 ~ 12104978 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAGGGAACTAAACAGGTACAGGTGGAGGAAGGTTAACTAATCAGGGACTAACGAAGACAGGTGCAGACATGACAGAACTGAACTAAACAGAACATAAACGTGACACATAGATTCCGCCACAGAATTAAAAAAAAGAAATTGTGACTTTTTTTTTGCCACTCAGAACTGCAATTGCACATTATAAAGTCAGAATTGCAAGATATAAACTAGCAATTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67181 lncRNA downstream 31220 12050978 ~ 12073540 (-) False G59014
TU67183 lncRNA downstream 45207 12050978 ~ 12059553 (-) True G59014
TU67176 lncRNA downstream 111421 11993061 ~ 11993339 (-) True G59011
TU67159 lncRNA downstream 168123 11936337 ~ 11936637 (-) True G58996
TU67043 lncRNA downstream 293917 11803538 ~ 11810843 (-) False G58885
TU67234 lncRNA upstream 821 12105799 ~ 12106029 (-) True G59055
TU67235 lncRNA upstream 1458 12106436 ~ 12106658 (-) False G59056
TU67236 lncRNA upstream 1458 12106436 ~ 12107613 (-) True G59056
TU67237 lncRNA upstream 2715 12107693 ~ 12108052 (-) True G59057
TU67238 lncRNA upstream 4084 12109062 ~ 12110518 (-) True G59058
CI01000009_12007202_12021667.mRNA mRNA downstream 82723 12006768 ~ 12022037 (-) True CI01000009_12007202_12021667
CI01000009_11947288_11963040.mRNA mRNA downstream 141720 11946457 ~ 11963040 (-) True CI01000009_11947288_11963040
CI01000009_11892743_11932618.mRNA mRNA downstream 172142 11892689 ~ 11932618 (-) True CI01000009_11892743_11932618
CI01000009_11885290_11889329.mRNA mRNA downstream 214904 11884974 ~ 11889856 (-) True CI01000009_11885290_11889329
CI01000009_11812069_11833136.mRNA mRNA downstream 271624 11811892 ~ 11833136 (-) True CI01000009_11812069_11833136
CI01000009_12152712_12167719.mRNA mRNA upstream 47487 12152465 ~ 12167719 (-) True CI01000009_12152712_12167719
CI01000009_12167744_12175422.mRNA mRNA upstream 62766 12167744 ~ 12175422 (-) True CI01000009_12167744_12175422
CI01000009_12176488_12184112.mRNA mRNA upstream 71176 12176154 ~ 12185660 (-) True CI01000009_12176488_12184112
CI01000009_12304891_12322499.mRNA mRNA upstream 199711 12304689 ~ 12322924 (-) True CI01000009_12304891_12322499
CI01000009_12486758_12498650.mRNA mRNA upstream 380648 12485626 ~ 12498650 (-) True CI01000009_12486758_12498650
TU64878 other downstream 3244197 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU63500 other downstream 3676748 8425821 ~ 8428012 (-) True G55814
TU60944 other downstream 6599512 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 7873291 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 8842803 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU67286 other upstream 183239 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 183239 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 1870410 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026
TU67748 other upstream 1928586 14033564 ~ 14037873 (-) True G59490
TU68092 other upstream 2757419 14862397 ~ 14887464 (-) True G59811

Expression Profile