RNA id: TU67204



Basic Information


Item Value
RNA id TU67204
length 5380
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id G59035
representative True

Chromosome Information


Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 12142828 ~ 12148540 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TGCTCTTTAAACTTTTATGAATAACAAAATCTTTTTTTTTTTTTTTCTCCATGGCACAGCACTATTTTCATTAATATCACAAATATAGAAAGATGGCAATTGTTTCGCCATCCCCAAAACTATTTAAAAAGTCAAACACTGAAAAATTGACAAAACACCAGTATTAAAAACCAGAACATCATCTTTCCACTCTCTCTCGTACACATGAACATCAACATTGGCACTTGCAGAACAATCAACTCAAATAGTGCTGAGCAAGTATACGATCCCCATGAGGAAAACCATCCATATTAAATGGCACAACTAACAAGAAGGCACGTCAACTGCACGTTAACAGGGGCTCTTCAGTCCACGTTACAGCATGCTTACGCCAATGCCCACATCACTTTCTCAATAAACCACCTAACAGCTTTAGTGATCTAATGGAGAGTTAAGGCATTACAAGTCAAACATCTGTTTCCACTGACAAATCAAGGTTTGATTCCAGTATTCTTTACTTGTTTTGATTAATATAAACACACAAATGGCATACTGTTATGAATTTAAAACTATACAGTCTCAGACAAACTGATTTTGTAAATAAGACCATTTTGATATTGTCTGACAAAAATTTGCTACAGTAATTTTAAGGTCACTTTGAAGGACCTCGCATTAGACACAATAAAGCATACTTTATACGATTCAAAAGGTGCATTAGCTTAACCTTCGGAGTGAAAACGGACCGTGTGACACAGTAGGTGCTGGGCCGATTTCCCTTTCTCACATCTGTTGCTTTGTGAAACTTGAATTTCAAGTGCTGCTGATTGCATCATGACTCTTTCATTTCTGATTTAGAAATTAAAATGGAGAAGAAAACATGATTTTTAAAAATAAAAAAAAAATAAAGGGATAATGAATGCTTGTTTCAGAGTCTAATAAACTTGTCTAGATAAAAAAAAAGACAGCATATTATTCATGTGATTGCCATTTATGGTTTTGTCCTCACTTAAGATCTTGAGGTAAACTCATTTAACAAAGGGAATGAGGGAAGCTTAACTCAAGATATAAACCCAAGAAGAGGAAGTCATTTTCTTAAAACACAAATCTTCTCAAATCACCCACCGAAGAGGACAATCAACTTGTTTCATTTTAACAGGGCTTCCCTCAACCATGAAAATGAAAGAGTTGCAAAGAAGGAAAGACACGTCTTTTTGTGAATCTCACCGAAAAACAAGCCTAGGCCACATTTACCCCTGAATTCAAATGAAAAATAAATACAAAATAATATTTGCATTCAGAATAGCATATTTTATGACAATTCAGATATTTTTTGCATTGTGAAATTATTTATGACAATTAAAATGTTTTTCCCTCATCATTACCATAATGCATCTGGACACTGTTTTTGTGTTTTTTTTTTTATTTTATTTTTTTAATTATTATTATTATTATTCACACTAGTGATTTTCATTAGATTTTCATAACTGTAATACAGTACTTTTTAGCAATAAGCATTAAAGGCAGTACAACAAATATAACCATAACGTATAAATACAATATAATTTAAATATATTATCATATTTGTTTACACATTACAGTAAATATAAGTTTGCATTTTTTGCATCATGGCGGAAATTGGGGGGAATGTGCTTAGTTGTCAAAATATTCTCACAAATGCAAAATCATTTTTCTTAAGCAAAATATAATTTCTTATTTCTATTATTTGACTTCAGGGTTAAATATGGTCTTGTCAGCTTTCCTGAGATTCACCCATTCGAGTGTTAAAACAATCAGCTTGTTATTTTATGCTTGTAATAGATAAAGCAGTCCTTCACAGTTCTGTCATTCGCCTTCTTTTCTCTATCAAACATCATGTGAATGGAATTCTGGGTAGGTGATGAGGACTGAGCTAGTGGCTGGTCCTGTTAGGGGGAAGCAGTGTGGTGCTCCGAGCCCAGCAGCCTCCCTGGCCCCATAGTGACAGCTGCCCTTAGTGTCTCGCTAGCTAGTAGTCCTCTGCTGCTTGAGCACAGTGTAGACATTATCCACTTTACTCAGTCTTTCGAAGAAAGGGATGAGATCCAGCAGCTCTGTGTCAGACATGTCATCAAACCAGGAGGCTACAGGTACCTAAACATGACAGAGAAGAGTTTCTGTTACTGTTTCTGGGACAAAGCGGCAAACCATTGACAAACTTTAGCAGGCTAAGCACTGTACAGACTCTATCGTCAGACCCAAAGCAGTTATATGCGCAAAAGAACAAAGAAAGGCAGTAACGTACAGCATTGTCTGGGTGGAAGATGTAGGAGGCTGGCGAGTTGTCCACAATGATGACTTTGTTGAGATCCCTGCCTAGACGGCTTAGGTCCTTGACATAATTTCCACGGTGGAACACACAAGATTCCCGGAAAAGACGGCTTCGGAAAGCTCCCCACTTGTCCAGCAGATCCGAGACAGGATCGGCATACTAGAAAAACAGAATCGCATTAATGTGATGGACGCGGTTAGACCGAGGAGACCAAAAAAAGTGCCAAGTATCAACAAAAAACAAGTGAACTCCTTTGTAAAAATGCAAGGCTCACACCAATGAACCAATGACTACTGAAATTCCATGTCAAATTCATGTGTGAGTACTGGATAAAGAAATCATTAATATAAACAACCCTCTTTAATTATATTTTGTTACTATATCTAGGTAGTAACTGATTATGGATTACATATCAGATTCCATAATTGATATACTTGTAATTAGATTATATTACATTTTAAAATACTCATAATCAGACTACTGTTACATTTTTTATTGATTACATGATTACTTAATATTCAAAAAAATGGAAGTAAATTATTTACAATTTTTATTCTCACTAATTCTGTCCTTTCTAAAACAGCCAATTGCTTATGTTCTGAAAGTCTTCCAGATTTGTGGAATTGCACAGCATAACAAATAAAATATTTCATCTTTTTTGTGTTTTACTTTGATTATTTTAAAATTCTACATTTTTTTGGGTTGATTATTACCTTTTCATCAACTTACAAACCCCCTGCAGTTCCTTCACAAACCTAGATTGGGAAACCCTGACATAATGTAATGTTTAATGCGCTTCATTTTGTTGATGACATTTTCAACCATTTATTTTTCTTTTTGTATTTTTATAATCACTATAGTACAAGATAATCCTATTCAAATCTATGTGATAAACAATTTCTAAAAGTAAGGTCAGAAGTAATCAGATTATAATACCTAAAATGCGTAATGTAATAGAGTACGTTATTAACTACAATTTTCATCATGTAATTTTTATTCAGTAATGGATTACAGTTTGCATGTATTCTGCCCAGCACTGTGTGTGTGTGATGTGTATGTTGTATCTACTGTATGCTGTATGCATGTGTGTGCGCTGTGGTATCTTGCACCAAGACGTTAGCAGCAGATCCTTCAAGTCCTGTAGGTTGCGAGGTGGAGCCGCCATGGATCAAATCTGTTGGTCCAGCACATCCCACAGATGCTCAATTGGATTGAGGGCAACACCTTGAACTCTTCATCATGTCCCTAAACCATTTCTGGCACGTGTCAAATTTGCATTTACATGAATGGCCAGACCCAGTGTTTCCCAGCAGAACATTGCCAAGAGCATCACACTCCCTCCTCCGACTTGTCATCGCCCCACAGTACATCCTGGTGCAATCACTTCTCCACGTAAATGGCACACACGTACACGGCCATCCACGTGATGTAAAAGAAAACAGGACTCATCGAACCACTTTCACTGCTCCAAGGTCCAGTTCCCAACGCTCATGTGCCCATTGTAGGCGTTTTCAATGGTGGAGAGAGATCATCAAAGGCACTCTAATTAGTCTGCAGCTACGCAGCCCCATACACAGCAGAGTGCGATGCACTGTGTACTGTGACACATTCCTCCCATAACTTCATTAAAATCTTGCATGACTTGTGCCACAGTATACCTTCTTTTGGCTTAGACCAGACGGGATAGCCTTCGTTGTCCTTGTGCATCAATGAGCCTTGGGTGCCCAACACCCTGTCGCTGGTTTGTGATTGTTTGCTCCACAGACCACTATTGGTAAATTCTCACCGCTGCTGACCAGGAGCAACCCACAAGCCTTGCCGTTTCAGAGATACCCTGACCAAGTCGCCTTGCCATAACAATTTGGGCATTCATAGTAATTCAGATATTTATTCCTGCCAATTTCTCCTGCATCCAACACGATTACGAGAACTAATTGCTTGCTCACCACCTAATCTACCCAAACCTTAATATGTGGCCTTGTAAGGAGATAATCAACAATATTCACTTCACCTGTCAGTCAGTAACGAAGACTTTTACATTGAAAATTGTTGTGAACACAAAACAAGACAACTGACAAATGCTTTGACTAGCGCTGTCAGTCACGGGAAAACCCCTTAACTGTTAAAAGGACAAGATAATACATTGGACATTTAAACAGATTATTTATTATGAACATAGGACTGACCTGAAGGAAAATGCTAAATCTGAATGCAGGTAATTAACTCGCTCACTCGATCTCTTTCTCACAATACTTTTCTACATTATACAGTAAGTTTCAATGAACAATACAAATTGAGAACAAACAGTTTACGTTGCTAAGAGTGGTTGCTAAGGGTCAGGAACTAACCGTTTTATATACAGTATATATTATGAAGCAGTGGCACGACTAAAATCTTATCTGAATAAAATCTTATCTAAAAACAGACACCAAAGTTGGCACACTGTTGCTATCAGATCAATTTATTAAGCTCACCTAGAGACAGCCAAGATATATGTGCTTTTTTACAGGTTAAGTCCATTTTAAAATAACTGGATGTTTTCCATAACTGTGGGAACCCAGTAACCGTCTATAAAACTGATAGATACAGTGAGTGATGTTAAATCCTATTTCTTAATAAACTAAATGCTGAATGCCTTGCATAGTGCAAAAATCCTTTTGCATTTCTTACCTTGGCTAAGCTTGCAGTGAATAACACACACTCAAACAGTTCCCCCATCCGTTTGAGGAACTCGTCAACATGAGGTCTCTTCAACACATACACCTACATTCAGAAGGTAGACAAAGGAAAAAACGGTTAAAATGTGTCATTACTTCAAAGTATTAAATCCACAGCTAGGGAAAAAAAAACAGCATATGAGAAAAACTGGTACTAAACCAGGGTCACATTCATAAAGTGCTTACAAAGTGCACTGTTACAGCTAAGATATCTTGCTAAATAAATAAGATTTATATTAGCCTGCATCTTGATATGATGCTTCATATAACGATGAACTTTATGTGATCGTAGAATGATAAACCCTGTTTTAAGAGAAGCAATAAAACGGGTTGTTTTACTCTAACAACTAGGTCAGCCAAGCTCATTTATGAAGCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU67251 lncRNA downstream 18134 12122840 ~ 12124694 (-) True G59071
TU67240 lncRNA downstream 29980 12112590 ~ 12112848 (-) True G59060
TU67239 lncRNA downstream 31046 12110735 ~ 12111782 (-) True G59059
TU67238 lncRNA downstream 32310 12109062 ~ 12110518 (-) True G59058
TU67237 lncRNA downstream 34776 12107693 ~ 12108052 (-) True G59057
TU67269 lncRNA upstream 40002 12188542 ~ 12188859 (-) True G59088
TU67271 lncRNA upstream 48609 12197149 ~ 12197440 (-) True G59090
TU67275 lncRNA upstream 51490 12200030 ~ 12200392 (-) True G59094
TU67289 lncRNA upstream 53386 12201926 ~ 12242338 (-) True G59099
TU67284 lncRNA upstream 100767 12249307 ~ 12263165 (-) True G59096
CI01000009_12007202_12021667.mRNA mRNA downstream 120791 12006768 ~ 12022037 (-) True CI01000009_12007202_12021667
CI01000009_11947288_11963040.mRNA mRNA downstream 179788 11946457 ~ 11963040 (-) True CI01000009_11947288_11963040
CI01000009_11892743_11932618.mRNA mRNA downstream 210210 11892689 ~ 11932618 (-) True CI01000009_11892743_11932618
CI01000009_11885290_11889329.mRNA mRNA downstream 252972 11884974 ~ 11889856 (-) True CI01000009_11885290_11889329
CI01000009_11812069_11833136.mRNA mRNA downstream 309692 11811892 ~ 11833136 (-) True CI01000009_11812069_11833136
CI01000009_12152712_12167719.mRNA mRNA upstream 3925 12152465 ~ 12167719 (-) True CI01000009_12152712_12167719
CI01000009_12167744_12175422.mRNA mRNA upstream 19204 12167744 ~ 12175422 (-) True CI01000009_12167744_12175422
CI01000009_12176488_12184112.mRNA mRNA upstream 27614 12176154 ~ 12185660 (-) True CI01000009_12176488_12184112
CI01000009_12304891_12322499.mRNA mRNA upstream 156149 12304689 ~ 12322924 (-) True CI01000009_12304891_12322499
CI01000009_12486758_12498650.mRNA mRNA upstream 337086 12485626 ~ 12498650 (-) True CI01000009_12486758_12498650
TU64878 other downstream 3282265 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU63500 other downstream 3714816 8425821 ~ 8428012 (-) True G55814
TU60944 other downstream 6637580 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 7911359 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 8880871 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU67286 other upstream 139677 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 139677 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 1826848 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026
TU67748 other upstream 1885024 14033564 ~ 14037873 (-) True G59490
TU68092 other upstream 2713857 14862397 ~ 14887464 (-) True G59811

Expression Profile