RNA id: TU65755


Basic Information

Item Value
RNA id TU65755
length 599
lncRNA type read_through
GC content 0.43
exon number 2
gene id G57724
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 12167531 ~ 12168221 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACCGTGTACATACATGTTTTTCATTGTGGTAAACAAGTAGTACCTTGTACAGTAACAGTGAAGACAACTTTATCATCTTGTGCATCACAAATGTACTCTCCTGAGTCCATCAACTCAGCACTCAGAACAATCAGAGATCTGAATGCCCCTTCCTCTTCACAGATGAAATGCTCCTTTCCCTCAATCTTCTCATTGTCTTTAAGCCAACTGACCACCCCATTTGCTCTTGAGATCTCACATTTTAAGACAATCGCATCAGATACTACAAACTGGCGTTTCGTTTCTATGTCAGCTTTCCGCAGAATTTTCAGTGGTGGATCTTTGATTTTCACTAGGAAGTCCATTACATCATCTCTGGCATCACAGACATATTGCCCTGCATCATCCAAAGCTGCGGAGTGAATGGTTAACTGTCGACTTGTGCCATCCTCTGTGATAGTAATGTTGATGTTCTCCTCAATCTCTTCTCCATCCTTCTTCCAGCTAACTTCAGCATTTGGTCGAGACACTTCACACTCAAGGACCACAATGTCTCCAACAAGTTTCTCTACTGCATAGGTTGTTTTCCTTGGCCGAATAAACCTAACTGGTGGCTCTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65848 lncRNA upstream 228892 11938378 ~ 11938639 (+) True G57813
TU65825 lncRNA upstream 332571 11834738 ~ 11834960 (+) True G57792
TU65750 lncRNA upstream 345000 11815069 ~ 11822531 (+) True G57719
TU65823 lncRNA upstream 379747 11787576 ~ 11787784 (+) True G57790
TU65822 lncRNA upstream 380205 11786904 ~ 11787326 (+) True G57789
TU65768 lncRNA downstream 3142 12171363 ~ 12172140 (+) True G57737
TU65888 lncRNA downstream 20324 12188545 ~ 12188820 (+) True G57850
TU65893 lncRNA downstream 29184 12197405 ~ 12197625 (+) True CI01000009_12198114_12221988
TU65735 lncRNA downstream 137418 12305639 ~ 12372174 (+) True G57704
TU65764 lncRNA downstream 157902 12326123 ~ 12350280 (+) True G57733
CI01000009_12130688_12146560.mRNA mRNA upstream 20589 12130688 ~ 12146942 (+) True CI01000009_12130688_12146560
CI01000009_12050866_12109305.mRNA mRNA upstream 57433 12050773 ~ 12110098 (+) True CI01000009_12050866_12109305
CI01000009_12028975_12032758.mRNA mRNA upstream 134494 12028495 ~ 12033037 (+) True CI01000009_12028975_12032758
CI01000009_12022660_12022944.mRNA mRNA upstream 144143 12022560 ~ 12023388 (+) True CI01000009_12022660_12022944
CI01000009_11993879_12004644.mRNA mRNA upstream 162766 11993644 ~ 12004765 (+) True CI01000009_11993879_12004644
CI01000009_12198114_12221988.mRNA mRNA downstream 28478 12196699 ~ 12221993 (+) False CI01000009_12198114_12221988
CI01000009_12249416_12290497.mRNA mRNA downstream 80742 12248963 ~ 12290598 (+) True CI01000009_12249416_12290497
CI01000009_12351325_12366549.mRNA mRNA downstream 183104 12351325 ~ 12366597 (+) True CI01000009_12351325_12366549
CI01000009_12387605_12388405.mRNA mRNA downstream 217001 12385222 ~ 12390665 (+) True CI01000009_12387605_12388405
CI01000009_12432736_12435509.mRNA mRNA downstream 264317 12432538 ~ 12435891 (+) False CI01000009_12432736_12435509
TU65844 other upstream 232280 11933942 ~ 11935251 (+) False G57811
TU65845 other upstream 232280 11933942 ~ 11935251 (+) False G57811
TU65846 other upstream 232280 11933942 ~ 11935251 (+) True G57811
TU65813 other upstream 400587 11760786 ~ 11760858 (+) True G57782
TU64139 other upstream 2310944 9853359 ~ 9853515 (+) True G56323
TU65746 other downstream 264337 12432558 ~ 12433084 (+) False CI01000009_12432736_12435509
TU65740 other downstream 266443 12434664 ~ 12436017 (+) True CI01000009_12432736_12435509
TU65711 other downstream 657248 12825469 ~ 12892339 (+) False G57682
TU65712 other downstream 693913 12862134 ~ 12892339 (+) True G57682
TU65722 other downstream 738223 12906444 ~ 12918465 (+) True G57691

Expression Profile