RNA id: TU67269


Basic Information

Item Value
RNA id TU67269
length 318
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G59088
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 12188542 ~ 12188859 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGTCTCCGCTCTAATTCATCCCAAAGGTGTTCTATCGAGTTGAGGTCAGGACTCTGTGCAGGCCAGTCAAGTTCCTCCACACCAAACTCACTCATCCCTGTCTTTATGGACCTTGCTTTGTGCACTGGTGCGCAGTCATGTTGGAACAGGAAGGGGCCATCCCCAAACTGTTCCCACAAAGTTGGGAGCATGAAATTGTCCAAAATGTCTTGGTATGCTGAAGCATTAAGTGTTCCTTTCACTGGAACTAAGGGGCCAAGCCCAACCCCTGAAAAACAACCCCACACCATAATCCCCCCTCCACCAAACTTTACACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67204 lncRNA downstream 40002 12142828 ~ 12148540 (-) True G59035
TU67251 lncRNA downstream 63848 12122840 ~ 12124694 (-) True G59071
TU67240 lncRNA downstream 75694 12112590 ~ 12112848 (-) True G59060
TU67239 lncRNA downstream 76760 12110735 ~ 12111782 (-) True G59059
TU67238 lncRNA downstream 78024 12109062 ~ 12110518 (-) True G59058
TU67271 lncRNA upstream 8290 12197149 ~ 12197440 (-) True G59090
TU67275 lncRNA upstream 11171 12200030 ~ 12200392 (-) True G59094
TU67289 lncRNA upstream 13067 12201926 ~ 12242338 (-) True G59099
TU67284 lncRNA upstream 60448 12249307 ~ 12263165 (-) True G59096
TU67281 lncRNA upstream 65429 12254288 ~ 12291965 (-) False G59095
CI01000009_12176488_12184112.mRNA mRNA downstream 2882 12176154 ~ 12185660 (-) True CI01000009_12176488_12184112
CI01000009_12167744_12175422.mRNA mRNA downstream 13120 12167744 ~ 12175422 (-) True CI01000009_12167744_12175422
CI01000009_12152712_12167719.mRNA mRNA downstream 20823 12152465 ~ 12167719 (-) True CI01000009_12152712_12167719
CI01000009_12007202_12021667.mRNA mRNA downstream 166505 12006768 ~ 12022037 (-) True CI01000009_12007202_12021667
CI01000009_11947288_11963040.mRNA mRNA downstream 225502 11946457 ~ 11963040 (-) True CI01000009_11947288_11963040
CI01000009_12304891_12322499.mRNA mRNA upstream 115830 12304689 ~ 12322924 (-) True CI01000009_12304891_12322499
CI01000009_12486758_12498650.mRNA mRNA upstream 296767 12485626 ~ 12498650 (-) True CI01000009_12486758_12498650
CI01000009_12531562_12540003.mRNA mRNA upstream 342266 12531125 ~ 12540373 (-) True CI01000009_12531562_12540003
CI01000009_12643324_12643737.mRNA mRNA upstream 454402 12643261 ~ 12643988 (-) True CI01000009_12643324_12643737
CI01000009_12659018_12693857.mRNA mRNA upstream 469504 12658363 ~ 12694684 (-) True CI01000009_12659018_12693857
TU64878 other downstream 3327979 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU63500 other downstream 3760530 8425821 ~ 8428012 (-) True G55814
TU60944 other downstream 6683294 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 7957073 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 8926585 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU67286 other upstream 99358 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 99358 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 1786529 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026
TU67748 other upstream 1844705 14033564 ~ 14037873 (-) True G59490
TU68092 other upstream 2673538 14862397 ~ 14887464 (-) True G59811

Expression Profile