RNA id: TU67289


Basic Information

Item Value
RNA id TU67289
length 377
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id G59099
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 12201926 ~ 12242338 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATAAGGTCACCCTTCATTTACATGCATAGAAAGATCTATGGTATGAGCTCTCTAAGGAGCATATGGAAGATCCATATGATGTGTTTTTACAGCTACAAGGGGTTGTAACCCCTGCACTGTGTCTCCATAAACCGAGGTCACCCTGGAAAAACTAATCTACAAGACCCAATGATGGTAAAGGCAGTTTGCGCAATAAAAACACCCTCAGCCTGAATCAATTACAAACTAAGACACAAATGCACATACACTACACAAAAAATCCATGTCCAACACCTTTCTTGCTCTGTGTGCATGTACATAAATGTTATCTTAGCAGGAAGGACAAAAAAAAGAAAAGAAAAAAAAAAAAAAAAAAGGATAAATAAAAAAAAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67275 lncRNA downstream 1534 12200030 ~ 12200392 (-) True G59094
TU67271 lncRNA downstream 4486 12197149 ~ 12197440 (-) True G59090
TU67269 lncRNA downstream 13067 12188542 ~ 12188859 (-) True G59088
TU67204 lncRNA downstream 53386 12142828 ~ 12148540 (-) True G59035
TU67251 lncRNA downstream 77232 12122840 ~ 12124694 (-) True G59071
TU67284 lncRNA upstream 6969 12249307 ~ 12263165 (-) True G59096
TU67281 lncRNA upstream 11950 12254288 ~ 12291965 (-) False G59095
TU67280 lncRNA upstream 24370 12266708 ~ 12291965 (-) True G59095
TU67290 lncRNA upstream 34022 12276360 ~ 12277913 (-) True G59100
TU67342 lncRNA upstream 123648 12365986 ~ 12369074 (-) True G59151
CI01000009_12176488_12184112.mRNA mRNA downstream 16266 12176154 ~ 12185660 (-) True CI01000009_12176488_12184112
CI01000009_12167744_12175422.mRNA mRNA downstream 26504 12167744 ~ 12175422 (-) True CI01000009_12167744_12175422
CI01000009_12152712_12167719.mRNA mRNA downstream 34207 12152465 ~ 12167719 (-) True CI01000009_12152712_12167719
CI01000009_12007202_12021667.mRNA mRNA downstream 179889 12006768 ~ 12022037 (-) True CI01000009_12007202_12021667
CI01000009_11947288_11963040.mRNA mRNA downstream 238886 11946457 ~ 11963040 (-) True CI01000009_11947288_11963040
CI01000009_12304891_12322499.mRNA mRNA upstream 62351 12304689 ~ 12322924 (-) True CI01000009_12304891_12322499
CI01000009_12486758_12498650.mRNA mRNA upstream 243288 12485626 ~ 12498650 (-) True CI01000009_12486758_12498650
CI01000009_12531562_12540003.mRNA mRNA upstream 288787 12531125 ~ 12540373 (-) True CI01000009_12531562_12540003
CI01000009_12643324_12643737.mRNA mRNA upstream 400923 12643261 ~ 12643988 (-) True CI01000009_12643324_12643737
CI01000009_12659018_12693857.mRNA mRNA upstream 416025 12658363 ~ 12694684 (-) True CI01000009_12659018_12693857
TU64878 other downstream 3341363 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU63500 other downstream 3773914 8425821 ~ 8428012 (-) True G55814
TU60944 other downstream 6696678 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 7970457 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 8939969 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU67286 other upstream 45879 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 45879 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 1733050 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026
TU67748 other upstream 1791226 14033564 ~ 14037873 (-) True G59490
TU68092 other upstream 2620059 14862397 ~ 14887464 (-) True G59811

Expression Profile