RNA id: TU67284


Basic Information

Item Value
RNA id TU67284
length 819
lncRNA type antisense_over
GC content 0.51
exon number 2
gene id G59096
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 12249307 ~ 12263165 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTATCTGGATCTGCTCCACTAGCATGGCCAACAAATACTCCATCCCCGGCATTCAGGTCCATATCATCTGGGGACCGCTCAAAATTGATGACCTGAGGATCTGAGTCACAGTTGAAGTAGAGGGAAACCTGCTCATTCAAAACACTGATGGAAAACCGGGTCCAGGTCATGGTCATCGAGGGCACGACGAATCTGGCCGCCTCATATGAACTCTGCGAGTCAGGCTCGGTGTAGTAGAAGATAATATGCTGCTTGCCGTTTTCCACTGCCGACAGCTTCACACCAACATACATGATGTTATGGGTTGGGTCAGTGATGGAGAATAAGACGCCAGGCTTGGTGGACGTGGGTTTTATGTTGAAAATGAGGGAGAAATCACGGTAGAAAGGGCTGGGCAGGTGGGCCGCAGCTGACTGTCCAACATTGGCTTTTGGGCTAAACATATAGCTGGGGCTGTTGTCATGTTCAAAGATTTTGGTGACGCCATCAGGTGGAGGATCGCCAATTAACTGCAACAGCGACACTCCACTTTCTTCTGCTGTTCTGGGCGGCTCTGTCCTCGGTCGTGATGTGGGCCTTAGGGTAGACAGGTAGGCCGGTGTCTGCGTGCCCTTTGCATTTGAGTCATCAGACCAGAACCAGCCATGTGTGTGGCATATCCTCAAGCACACCACAATAAAGAGGCACAGCCAAAACCTGAGCTCAGACATCACGTTCACTTCCAGTCATTCAGCAATTCAAGCAGGATCCTGACATGCCCTCAACAGTAATCCACACCACACACACAGAGACTCGTCCCTGGCTCACCGTAAAGTCACC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67289 lncRNA downstream 6969 12201926 ~ 12242338 (-) True G59099
TU67275 lncRNA downstream 48915 12200030 ~ 12200392 (-) True G59094
TU67271 lncRNA downstream 51867 12197149 ~ 12197440 (-) True G59090
TU67269 lncRNA downstream 60448 12188542 ~ 12188859 (-) True G59088
TU67204 lncRNA downstream 100767 12142828 ~ 12148540 (-) True G59035
TU67280 lncRNA upstream 3543 12266708 ~ 12291965 (-) True G59095
TU67290 lncRNA upstream 13195 12276360 ~ 12277913 (-) True G59100
TU67342 lncRNA upstream 102821 12365986 ~ 12369074 (-) True G59151
TU67375 lncRNA upstream 110710 12373875 ~ 12374203 (-) True G59184
TU67376 lncRNA upstream 111161 12374326 ~ 12374805 (-) True G59185
CI01000009_12176488_12184112.mRNA mRNA downstream 63647 12176154 ~ 12185660 (-) True CI01000009_12176488_12184112
CI01000009_12167744_12175422.mRNA mRNA downstream 73885 12167744 ~ 12175422 (-) True CI01000009_12167744_12175422
CI01000009_12152712_12167719.mRNA mRNA downstream 81588 12152465 ~ 12167719 (-) True CI01000009_12152712_12167719
CI01000009_12007202_12021667.mRNA mRNA downstream 227270 12006768 ~ 12022037 (-) True CI01000009_12007202_12021667
CI01000009_11947288_11963040.mRNA mRNA downstream 286267 11946457 ~ 11963040 (-) True CI01000009_11947288_11963040
CI01000009_12304891_12322499.mRNA mRNA upstream 41524 12304689 ~ 12322924 (-) True CI01000009_12304891_12322499
CI01000009_12486758_12498650.mRNA mRNA upstream 222461 12485626 ~ 12498650 (-) True CI01000009_12486758_12498650
CI01000009_12531562_12540003.mRNA mRNA upstream 267960 12531125 ~ 12540373 (-) True CI01000009_12531562_12540003
CI01000009_12643324_12643737.mRNA mRNA upstream 380096 12643261 ~ 12643988 (-) True CI01000009_12643324_12643737
CI01000009_12659018_12693857.mRNA mRNA upstream 395198 12658363 ~ 12694684 (-) True CI01000009_12659018_12693857
TU64878 other downstream 3388744 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU63500 other downstream 3821295 8425821 ~ 8428012 (-) True G55814
TU60944 other downstream 6744059 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 8017838 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 8987350 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU67286 other upstream 25052 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 25052 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 1712223 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026
TU67748 other upstream 1770399 14033564 ~ 14037873 (-) True G59490
TU68092 other upstream 2599232 14862397 ~ 14887464 (-) True G59811

Expression Profile