RNA id: TU67290


Basic Information

Item Value
RNA id TU67290
length 928
lncRNA type antisense_over
GC content 0.41
exon number 3
gene id G59100
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 12276360 ~ 12277913 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAATATTAGTTTTGTTCAGATATGACCAATGCCCGATGCATTATGCATAGTCTCAAGGACAGAAACACAATGTGCCTTTGTGTTTGCAATGATGCATATCTTAAACCTGTATTAACATCATTCTCTGCTTGTGATGGGGAACACCATAGGGATCTATTACTGTCCTAACACATCAACGGCAAATACAAGACCACTTCTGACACATGCAGCTTGAAATGGTATAACGCTGTTCCTTTTAAATGTAAATGCATTCACTAATAGAAAACGGAGGCAGTAATTGAACCATTCCTTTCTCTGTGAGCTACTCACCGGCTCCCCATCAACTCCAGGAGGACCAGGGGGTCCTGGTGGTCCTCTTGGTCCTGCCACCTTTTGAACAACTGACCCATCTCCTCTCATCTCTACATCTGCACTGGGCCCGGGGGGACCGGGAGGTCCTGGAGGCCCAGCGGGACCACGATCACCCTTTGATCCAGGATAACCAAAACCTGAACTGCCCTTTATTCCTTTCTCTCCTGCGTCACCCTTCTCTCCTTTTGCAGCACCACCAGACACAGATCCAGATCCTGAATCGCCCTTTGGCCCTGTAAGGCCCCTGTCACCTTTGGCACCCTTCTCTCCTCTGTCTCCTTTCTCTCCTCTTGCACCAATAGAACCTGAAAATTTGAAAATGACTTTAATCATGCATTAATCTTATGTGCTTTACATTTACCAAAACATATCTGGTGCATATCTTTCAATCCAAAATAAAAGAAATCATATTTTGCATTAAGAAAATAAAGCCTATTCTGAGACCATTAAGATTTTTTAAACTGTGATATACATAAGTTTTCCTGTTATTTTCATTACCAAAATGCTAAATAATTGCTAAAAAATAATTACATATTATTTAAATTGTTAAAGGGTTAGTTCACCCAAAAATGAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67284 lncRNA downstream 13195 12249307 ~ 12263165 (-) True G59096
TU67289 lncRNA downstream 34022 12201926 ~ 12242338 (-) True G59099
TU67275 lncRNA downstream 75968 12200030 ~ 12200392 (-) True G59094
TU67271 lncRNA downstream 78920 12197149 ~ 12197440 (-) True G59090
TU67269 lncRNA downstream 87501 12188542 ~ 12188859 (-) True G59088
TU67342 lncRNA upstream 88073 12365986 ~ 12369074 (-) True G59151
TU67375 lncRNA upstream 95962 12373875 ~ 12374203 (-) True G59184
TU67376 lncRNA upstream 96413 12374326 ~ 12374805 (-) True G59185
TU67377 lncRNA upstream 96953 12374866 ~ 12375298 (-) True G59186
TU67391 lncRNA upstream 115334 12393247 ~ 12393532 (-) True G59200
CI01000009_12176488_12184112.mRNA mRNA downstream 90700 12176154 ~ 12185660 (-) True CI01000009_12176488_12184112
CI01000009_12167744_12175422.mRNA mRNA downstream 100938 12167744 ~ 12175422 (-) True CI01000009_12167744_12175422
CI01000009_12152712_12167719.mRNA mRNA downstream 108641 12152465 ~ 12167719 (-) True CI01000009_12152712_12167719
CI01000009_12007202_12021667.mRNA mRNA downstream 254323 12006768 ~ 12022037 (-) True CI01000009_12007202_12021667
CI01000009_11947288_11963040.mRNA mRNA downstream 313320 11946457 ~ 11963040 (-) True CI01000009_11947288_11963040
CI01000009_12304891_12322499.mRNA mRNA upstream 26776 12304689 ~ 12322924 (-) True CI01000009_12304891_12322499
CI01000009_12486758_12498650.mRNA mRNA upstream 207713 12485626 ~ 12498650 (-) True CI01000009_12486758_12498650
CI01000009_12531562_12540003.mRNA mRNA upstream 253212 12531125 ~ 12540373 (-) True CI01000009_12531562_12540003
CI01000009_12643324_12643737.mRNA mRNA upstream 365348 12643261 ~ 12643988 (-) True CI01000009_12643324_12643737
CI01000009_12659018_12693857.mRNA mRNA upstream 380450 12658363 ~ 12694684 (-) True CI01000009_12659018_12693857
TU64878 other downstream 3415797 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU63500 other downstream 3848348 8425821 ~ 8428012 (-) True G55814
TU60944 other downstream 6771112 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 8044891 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 9014403 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU67286 other upstream 10304 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 10304 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 1697475 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026
TU67748 other upstream 1755651 14033564 ~ 14037873 (-) True G59490
TU68092 other upstream 2584484 14862397 ~ 14887464 (-) True G59811

Expression Profile