RNA id: TU67287


Basic Information

Item Value
RNA id TU67287
length 646
RNA type TUCP
GC content 0.50
exon number 2
gene id G59097
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 12288217 ~ 12289518 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTAAGGACGACCCTGGTTGTTGCCATTTTATGAAAGCAATGGAGAAGCTGTGCTTTACAGTGATTTTATCATGGTTTTTACACTCTTTACCATGTTAAAATCAGTGTAATCTAATGGCTTGTTGCTTTGATAATCTGGAATGAAGTAACAGACTACACACCTTGAGGTTAACAATCGGTAATGTCTCTCTGTCGGATTTGCGGACGATACTGTAGAGATCCTGAAGTTTGGAAGACAGGAAGGCTCTGAATGTTCCCTTCAAACCCACGGCCCTAGCCTGCTGGAAGCACAGGAAGTCTGCCCCACGAATGCCTCTCATGTTCCCCACTTGTGGAGACGGAAGTATGGGTGTGGCCTTCTGGTTGATTGACAGGGGGGCTGGGACGGCGGGCTGGAGTGATAGGGTTCCTCTCAGGTTGAACAGGGTATCTGATTTCTGGTTGTACAGGATTGTACCTGCTATCAGTGTAGGGTGGGTATCGTGGATCTGGGTAACGGGAGTCAGGCGGATTGGGGTTTCTATTCTCTGGCTCACTCCTTGGAAACTCAATCGGCTGGTGCGGTGGAGAAATCTGCTCTGCTCCATTGTTAGCTGTGTGGTCCTGGGAATAGTGAACAACAGGGGGCGGCTGGACCGCTGCCACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67290 lncRNA downstream 10304 12276360 ~ 12277913 (-) True G59100
TU67284 lncRNA downstream 25052 12249307 ~ 12263165 (-) True G59096
TU67289 lncRNA downstream 45879 12201926 ~ 12242338 (-) True G59099
TU67275 lncRNA downstream 87825 12200030 ~ 12200392 (-) True G59094
TU67271 lncRNA downstream 90777 12197149 ~ 12197440 (-) True G59090
TU67342 lncRNA upstream 77009 12365986 ~ 12369074 (-) True G59151
TU67375 lncRNA upstream 84898 12373875 ~ 12374203 (-) True G59184
TU67376 lncRNA upstream 85349 12374326 ~ 12374805 (-) True G59185
TU67377 lncRNA upstream 85889 12374866 ~ 12375298 (-) True G59186
TU67391 lncRNA upstream 104270 12393247 ~ 12393532 (-) True G59200
CI01000009_12176488_12184112.mRNA mRNA downstream 102557 12176154 ~ 12185660 (-) True CI01000009_12176488_12184112
CI01000009_12167744_12175422.mRNA mRNA downstream 112795 12167744 ~ 12175422 (-) True CI01000009_12167744_12175422
CI01000009_12152712_12167719.mRNA mRNA downstream 120498 12152465 ~ 12167719 (-) True CI01000009_12152712_12167719
CI01000009_12007202_12021667.mRNA mRNA downstream 266180 12006768 ~ 12022037 (-) True CI01000009_12007202_12021667
CI01000009_11947288_11963040.mRNA mRNA downstream 325177 11946457 ~ 11963040 (-) True CI01000009_11947288_11963040
CI01000009_12304891_12322499.mRNA mRNA upstream 15712 12304689 ~ 12322924 (-) True CI01000009_12304891_12322499
CI01000009_12486758_12498650.mRNA mRNA upstream 196649 12485626 ~ 12498650 (-) True CI01000009_12486758_12498650
CI01000009_12531562_12540003.mRNA mRNA upstream 242148 12531125 ~ 12540373 (-) True CI01000009_12531562_12540003
CI01000009_12643324_12643737.mRNA mRNA upstream 354284 12643261 ~ 12643988 (-) True CI01000009_12643324_12643737
CI01000009_12659018_12693857.mRNA mRNA upstream 369386 12658363 ~ 12694684 (-) True CI01000009_12659018_12693857
TU64878 other downstream 3427654 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU63500 other downstream 3860205 8425821 ~ 8428012 (-) True G55814
TU60944 other downstream 6782969 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 8056748 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 9026260 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU67750 other upstream 1686411 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026
TU67748 other upstream 1744587 14033564 ~ 14037873 (-) True G59490
TU68092 other upstream 2573420 14862397 ~ 14887464 (-) True G59811
TU68236 other upstream 2843127 15132104 ~ 15132503 (-) True G59941
TU68714 other upstream 3087283 15376260 ~ 15443047 (-) True G60362

Expression Profile