RNA id: TU67376


Basic Information

Item Value
RNA id TU67376
length 480
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G59185
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 12374326 ~ 12374805 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGCGTTTTGCTCTGTGATTGACATTGAAATGTATCCTGCTCCACACATTTATGAACAAAGTGATTTTTTTTATTTTTTTTTTAATAAGTGTAATTCATTTAATCTTTGCATTGGCTGTCTAGCAAACCCAAAATTATGCTAAAGCCTTGCTGAAGATTCAATGTTGTTTTTAACTTAAGCTTATTTATTTTGTCAGCTGCGTTCTTAATGAATTGAGTTTCTTTTATTGGCAGCTATGCTTTATGCAACTTCAAATAAGGCTGTCAGGACACATGGGAATCACATATTATTGGGTTTTAGTATATTTAGGATGAAGTCAGATCCTCAGGGCACAGTTTTAATTCAGAATATTGTCAGTGGAAATTGAATGTCATATCAAGAGATGAAGATATAATGAGTTAGTGCACATCTAAGAGAAATATTCTACAGAAGGAAATAGAACACTTGAAAAAAATCCCCTTTAGCTTGACATATTTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67375 lncRNA downstream 123 12373875 ~ 12374203 (-) True G59184
TU67342 lncRNA downstream 5252 12365986 ~ 12369074 (-) True G59151
TU67281 lncRNA downstream 82361 12254288 ~ 12291965 (-) False G59095
TU67280 lncRNA downstream 82361 12266708 ~ 12291965 (-) True G59095
TU67290 lncRNA downstream 96413 12276360 ~ 12277913 (-) True G59100
TU67377 lncRNA upstream 61 12374866 ~ 12375298 (-) True G59186
TU67391 lncRNA upstream 18442 12393247 ~ 12393532 (-) True G59200
TU67411 lncRNA upstream 26799 12401604 ~ 12401921 (-) True G59206
TU67414 lncRNA upstream 31991 12406796 ~ 12407103 (-) True G59209
TU67418 lncRNA upstream 36112 12410917 ~ 12411142 (-) True G59213
CI01000009_12304891_12322499.mRNA mRNA downstream 51402 12304689 ~ 12322924 (-) True CI01000009_12304891_12322499
CI01000009_12176488_12184112.mRNA mRNA downstream 188666 12176154 ~ 12185660 (-) True CI01000009_12176488_12184112
CI01000009_12167744_12175422.mRNA mRNA downstream 198904 12167744 ~ 12175422 (-) True CI01000009_12167744_12175422
CI01000009_12152712_12167719.mRNA mRNA downstream 206607 12152465 ~ 12167719 (-) True CI01000009_12152712_12167719
CI01000009_12007202_12021667.mRNA mRNA downstream 352289 12006768 ~ 12022037 (-) True CI01000009_12007202_12021667
CI01000009_12486758_12498650.mRNA mRNA upstream 110821 12485626 ~ 12498650 (-) True CI01000009_12486758_12498650
CI01000009_12531562_12540003.mRNA mRNA upstream 156320 12531125 ~ 12540373 (-) True CI01000009_12531562_12540003
CI01000009_12643324_12643737.mRNA mRNA upstream 268456 12643261 ~ 12643988 (-) True CI01000009_12643324_12643737
CI01000009_12659018_12693857.mRNA mRNA upstream 283558 12658363 ~ 12694684 (-) True CI01000009_12659018_12693857
CI01000009_12711691_12713525.mRNA mRNA upstream 336776 12711581 ~ 12713525 (-) True CI01000009_12711691_12713525
TU67286 other downstream 84808 12288217 ~ 12289518 (-) False G59097
TU67287 other downstream 85349 12288217 ~ 12288977 (-) True G59097
TU64878 other downstream 3513763 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU63500 other downstream 3946314 8425821 ~ 8428012 (-) True G55814
TU60944 other downstream 6869078 5502395 ~ 5505248 (-) False G53515
TU67750 other upstream 1600583 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026
TU67748 other upstream 1658759 14033564 ~ 14037873 (-) True G59490
TU68092 other upstream 2487592 14862397 ~ 14887464 (-) True G59811
TU68236 other upstream 2757299 15132104 ~ 15132503 (-) True G59941
TU68714 other upstream 3001455 15376260 ~ 15443047 (-) True G60362

Expression Profile