RNA id: TU67451


Basic Information

Item Value
RNA id TU67451
length 230
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G59245
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 12470036 ~ 12470265 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTGCTGCCAGCACTGGGGAGCTACAGTTCATTAAGGGGAACCATGAATGCCAACATGTACTGTGACATACTGAAGCAGAGCATGATCCCCTCCCTTCGGAGACTGGGCCACAGGGCAGTATTCCAACATGATAACGACCTCCAAGACGACCACTGCCTTGCTAAAGAATGTCTCCAGACCTAAACCCTATTGAGCATCTGTGGGGCACACAAAATATTGACACTTTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67436 lncRNA downstream 22858 12446959 ~ 12447178 (-) True G59230
TU67430 lncRNA downstream 36985 12432563 ~ 12433051 (-) True G59224
TU67429 lncRNA downstream 37117 12432563 ~ 12432919 (-) False G59224
TU67425 lncRNA downstream 41672 12428137 ~ 12428364 (-) True G59220
TU67418 lncRNA downstream 58894 12410917 ~ 12411142 (-) True G59213
TU67461 lncRNA upstream 71273 12541538 ~ 12542357 (-) True G59255
TU67519 lncRNA upstream 124466 12594731 ~ 12597373 (-) True G59295
TU67524 lncRNA upstream 149124 12619389 ~ 12619594 (-) True G59300
TU67525 lncRNA upstream 151985 12622250 ~ 12622592 (-) True G59301
TU67526 lncRNA upstream 155643 12625908 ~ 12626159 (-) True G59302
CI01000009_12304891_12322499.mRNA mRNA downstream 147112 12304689 ~ 12322924 (-) True CI01000009_12304891_12322499
CI01000009_12176488_12184112.mRNA mRNA downstream 284376 12176154 ~ 12185660 (-) True CI01000009_12176488_12184112
CI01000009_12167744_12175422.mRNA mRNA downstream 294614 12167744 ~ 12175422 (-) True CI01000009_12167744_12175422
CI01000009_12152712_12167719.mRNA mRNA downstream 302317 12152465 ~ 12167719 (-) True CI01000009_12152712_12167719
CI01000009_12007202_12021667.mRNA mRNA downstream 447999 12006768 ~ 12022037 (-) True CI01000009_12007202_12021667
CI01000009_12486758_12498650.mRNA mRNA upstream 15361 12485626 ~ 12498650 (-) True CI01000009_12486758_12498650
CI01000009_12531562_12540003.mRNA mRNA upstream 60860 12531125 ~ 12540373 (-) True CI01000009_12531562_12540003
CI01000009_12643324_12643737.mRNA mRNA upstream 172996 12643261 ~ 12643988 (-) True CI01000009_12643324_12643737
CI01000009_12659018_12693857.mRNA mRNA upstream 188098 12658363 ~ 12694684 (-) True CI01000009_12659018_12693857
CI01000009_12711691_12713525.mRNA mRNA upstream 241316 12711581 ~ 12713525 (-) True CI01000009_12711691_12713525
TU67286 other downstream 180518 12288217 ~ 12289518 (-) False G59097
TU67287 other downstream 181059 12288217 ~ 12288977 (-) True G59097
TU64878 other downstream 3609473 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU63500 other downstream 4042024 8425821 ~ 8428012 (-) True G55814
TU60944 other downstream 6964788 5502395 ~ 5505248 (-) False G53515
TU67750 other upstream 1505123 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026
TU67748 other upstream 1563299 14033564 ~ 14037873 (-) True G59490
TU68092 other upstream 2392132 14862397 ~ 14887464 (-) True G59811
TU68236 other upstream 2661839 15132104 ~ 15132503 (-) True G59941
TU68714 other upstream 2905995 15376260 ~ 15443047 (-) True G60362

Expression Profile