RNA id: TU65787



Basic Information


Item Value
RNA id TU65787
length 1202
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id G57756
representative True

Chromosome Information


Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 12528533 ~ 12594745 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTCCAAAATGCTGAGATAAAGTTATGTGTTTTTTTTGTTTGTTTGTTTGTTTGTTTTTTTCATGTAAACTTACTTTAAAGAAAATATTAGGATTTTGAGGAAAAAAGGAAAAAAACAATGAGATTCTGAAATTCATATTACATTATTAAATCATCTTTTAAGTCAAGTTGTTGTGCTGATAGCAAAAAAGATTAAATTAGAAAAGTATTTAGCTTTTATTTTTATTTCAGATTTGATTTTAGTTAAGGTTTTAGTACTTTTTATGTGCTTTTGTCATTTTTTTCATGCCTTTTTTTTAATACACTGCCCGGCCAAAAAAAAAAAAAAAACAAAAAAACATAACTTTTGATAGTAAACAAAAATAAAAGGATTTTTATAGTAAGCTCTTAAAGGGTTAGTTCACCCAAAAATGAAAATTCTGACATCAATTACTCACCCTCATGTCGTTCCACACCTGTAAGACCTTCGTTTATCTTAGGAACACAAATTAAGATATTTTTCATAAAATCTGATGGCTCAGTGAGGCCTGCATTGCCAGCAAGACAATTAACACTTTCAATGCCCAGAAAGCTACAAAAGACATTTAAAACAGCTCATGTGACTACAGTGGTTCAAACTAATGTTATGAAGCGACGAGAATACTTTTTGTGCACCCAAAACCCCCTTAAAATAATGACTTTATTCAACAATGTCTAGTGATGGGCGATTTCAAAACACTGCTTCATGAAGCTTCGAAGCTTTACATCTTTTGTTCCGAATCAGTGGTTCGGAGCATGTATCAAACTGCCAAAGTCACGTGATTTCAGTAAATGAGGCTTTGTTACATGATGAGTGTTTCGAAATGTCAATGGTTCGCCACTGGGGGGCATGACTTTGGCATGGCCTATTATGCAAAATTCACTTTTGCATGGTGTTTGGCTATAAATGTGTGTTGGCAGTGTGTGTAAATCCAACCACTCATTTTTTTTAATCCCCATAAATCATAAGCAGTGTCTCAGAACAAGCCGTTTCCAGATCCCTGGCAATGTGACATCACATTAGCCACAGGCCCCGCCCACGAATGTTGACAGACACTGCCGTTTTAACATAGAACCGCCCTGAGTGAGTTCACAGCCAGTTGAACAGTCCGCCATTGCACTGACGAACGTCTCGCAAGCATTTTAGGTGTTCTGTAGCTGGATTTGTGAGTGATTTAGAGCACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU65959 lncRNA upstream 46501 12481744 ~ 12482032 (+) True G57911
TU65948 lncRNA upstream 54003 12473935 ~ 12474530 (+) True G57903
TU65945 lncRNA upstream 57929 12470282 ~ 12470604 (+) True G57900
TU65941 lncRNA upstream 65581 12462546 ~ 12462952 (+) True G57896
TU65935 lncRNA upstream 73453 12454786 ~ 12455080 (+) True G57890
TU65770 lncRNA downstream 329248 12923993 ~ 12926242 (+) True G57739
TU66059 lncRNA downstream 445581 13040326 ~ 13047175 (+) True G58005
TU66052 lncRNA downstream 447068 13041813 ~ 13061580 (+) False G58004
TU66053 lncRNA downstream 448372 13043117 ~ 13051465 (+) False G58004
TU66056 lncRNA downstream 452498 13047243 ~ 13050867 (+) False G58004
CI01000009_12504532_12504815.mRNA mRNA upstream 23639 12504380 ~ 12504894 (+) True CI01000009_12504532_12504815
CI01000009_12432736_12435509.mRNA mRNA upstream 92642 12432538 ~ 12435891 (+) False CI01000009_12432736_12435509
CI01000009_12387605_12388405.mRNA mRNA upstream 137868 12385222 ~ 12390665 (+) True CI01000009_12387605_12388405
CI01000009_12351325_12366549.mRNA mRNA upstream 161936 12351325 ~ 12366597 (+) True CI01000009_12351325_12366549
CI01000009_12249416_12290497.mRNA mRNA upstream 237935 12248963 ~ 12290598 (+) True CI01000009_12249416_12290497
CI01000009_12646484_12653748.mRNA mRNA downstream 51739 12646484 ~ 12653857 (+) True CI01000009_12646484_12653748
CI01000009_12854692_12859028.mRNA mRNA downstream 259448 12854193 ~ 12861031 (+) True CI01000009_12854692_12859028
CI01000009_13194613_13197758.mRNA mRNA downstream 599692 13194437 ~ 13199701 (+) True CI01000009_13194613_13197758
CI01000009_13394582_13476351.mRNA mRNA downstream 797561 13392306 ~ 13476807 (+) True CI01000009_13394582_13476351
CI01000009_13549003_13580198.mRNA mRNA downstream 954258 13549003 ~ 13580233 (+) True CI01000009_13549003_13580198
TU65740 other upstream 92516 12434664 ~ 12436017 (+) True CI01000009_12432736_12435509
TU65746 other upstream 95449 12432558 ~ 12433084 (+) False CI01000009_12432736_12435509
TU65844 other upstream 593282 11933942 ~ 11935251 (+) False G57811
TU65711 other downstream 230724 12825469 ~ 12892339 (+) False G57682
TU65712 other downstream 267389 12862134 ~ 12892339 (+) True G57682
TU65722 other downstream 311699 12906444 ~ 12918465 (+) True G57691
TU65732 other downstream 411898 13006643 ~ 13023138 (+) True G57701
TU66091 other downstream 545633 13140378 ~ 13143608 (+) True G58028

Expression Profile