RNA id: TU67525


Basic Information

Item Value
RNA id TU67525
length 343
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G59301
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 12622250 ~ 12622592 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGCAAATGGTTTGGTGTTAGAATCCTCCATAATTTTACAAGGTTTTAAATGGAAAACACGTCCTTATTCTAACAGATTTCTCACTCTAAAGGGATGCTGGCCGAAGTAAAGCCCTTTAACCCTACTAAGTGCTCCAAGCCACATTTCCACCACACTCTCAATGCCAATGTTCTGGCATGGGCAGATAAGAGCCTCAAAACCAGCCACAGAGACCGCGACAGAATGAATTTTGAAAGCTATTGGAGACAAGCTTCCAAGAACCAGACACAACCTTTCCATCTATTAAACCAGTTAACAAATGCTTGTTAAAACTGAGGTCAACAGAGCCAAACAACCATCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67524 lncRNA downstream 2656 12619389 ~ 12619594 (-) True G59300
TU67519 lncRNA downstream 24877 12594731 ~ 12597373 (-) True G59295
TU67461 lncRNA downstream 79893 12541538 ~ 12542357 (-) True G59255
TU67451 lncRNA downstream 151985 12470036 ~ 12470265 (-) True G59245
TU67436 lncRNA downstream 175072 12446959 ~ 12447178 (-) True G59230
TU67526 lncRNA upstream 3316 12625908 ~ 12626159 (-) True G59302
TU67527 lncRNA upstream 4797 12627389 ~ 12627624 (-) True G59303
TU67528 lncRNA upstream 8221 12630813 ~ 12631157 (-) True G59304
TU67500 lncRNA upstream 488043 13110635 ~ 13198396 (-) True G59276
TU67508 lncRNA upstream 524030 13159129 ~ 13159386 (-) True G59284
CI01000009_12531562_12540003.mRNA mRNA downstream 81877 12531125 ~ 12540373 (-) True CI01000009_12531562_12540003
CI01000009_12486758_12498650.mRNA mRNA downstream 123600 12485626 ~ 12498650 (-) True CI01000009_12486758_12498650
CI01000009_12304891_12322499.mRNA mRNA downstream 299326 12304689 ~ 12322924 (-) True CI01000009_12304891_12322499
CI01000009_12176488_12184112.mRNA mRNA downstream 436590 12176154 ~ 12185660 (-) True CI01000009_12176488_12184112
CI01000009_12167744_12175422.mRNA mRNA downstream 446828 12167744 ~ 12175422 (-) True CI01000009_12167744_12175422
CI01000009_12643324_12643737.mRNA mRNA upstream 20669 12643261 ~ 12643988 (-) True CI01000009_12643324_12643737
CI01000009_12659018_12693857.mRNA mRNA upstream 35771 12658363 ~ 12694684 (-) True CI01000009_12659018_12693857
CI01000009_12711691_12713525.mRNA mRNA upstream 88989 12711581 ~ 12713525 (-) True CI01000009_12711691_12713525
CI01000009_12715240_12852745.mRNA mRNA upstream 92648 12715240 ~ 12852811 (-) True CI01000009_12715240_12852745
CI01000009_12863333_13023317.mRNA mRNA upstream 240028 12862620 ~ 13023317 (-) True CI01000009_12863333_13023317
TU67286 other downstream 332732 12288217 ~ 12289518 (-) False G59097
TU67287 other downstream 333273 12288217 ~ 12288977 (-) True G59097
TU64878 other downstream 3761687 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU63500 other downstream 4194238 8425821 ~ 8428012 (-) True G55814
TU60944 other downstream 7117002 5502395 ~ 5505248 (-) False G53515
TU67750 other upstream 1352796 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026
TU67748 other upstream 1410972 14033564 ~ 14037873 (-) True G59490
TU68092 other upstream 2239805 14862397 ~ 14887464 (-) True G59811
TU68236 other upstream 2509512 15132104 ~ 15132503 (-) True G59941
TU68714 other upstream 2753668 15376260 ~ 15443047 (-) True G60362

Expression Profile