RNA id: TU66244


Basic Information

Item Value
RNA id TU66244
length 203
lncRNA type intronic
GC content 0.43
exon number 1
gene id G58179
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 13357918 ~ 13358120 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACCGAGTGCCGCTCCTGTCAGCTAAGAACAGGAAACTGAGGCTATAATTCGCACAGGCTCAGCAAAATTGGACAAACAATTGGAAAAATGTTGCCTGGTCTGATGAGTCTCAATTTCTGCTGCAACATTCAGATGGTAGGAGCAGAATTTGGCGTAAACAACATGAAAGCATGGATCCATTCTGCCTTATATCAACAATTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66241 lncRNA upstream 4008 13353688 ~ 13353910 (+) True G58176
TU66240 lncRNA upstream 4319 13353380 ~ 13353599 (+) True G58175
TU66238 lncRNA upstream 5317 13352377 ~ 13352601 (+) True G58173
TU66236 lncRNA upstream 5869 13351822 ~ 13352049 (+) True G58171
TU66227 lncRNA upstream 9651 13347828 ~ 13348267 (+) True G58162
TU66233 lncRNA downstream 24484 13382604 ~ 13383104 (+) True G58168
TU66271 lncRNA downstream 27866 13385986 ~ 13386197 (+) True G58205
TU66321 lncRNA downstream 165493 13523613 ~ 13585256 (+) True G58252
TU66383 lncRNA downstream 279164 13637284 ~ 13646396 (+) True G58307
TU66377 lncRNA downstream 387701 13745821 ~ 13748823 (+) True G58301
CI01000009_13194613_13197758.mRNA mRNA upstream 158217 13194437 ~ 13199701 (+) True CI01000009_13194613_13197758
CI01000009_12854692_12859028.mRNA mRNA upstream 496887 12854193 ~ 12861031 (+) True CI01000009_12854692_12859028
CI01000009_12646484_12653748.mRNA mRNA upstream 704061 12646484 ~ 12653857 (+) True CI01000009_12646484_12653748
CI01000009_12504532_12504815.mRNA mRNA upstream 853024 12504380 ~ 12504894 (+) True CI01000009_12504532_12504815
CI01000009_12432736_12435509.mRNA mRNA upstream 922027 12432538 ~ 12435891 (+) False CI01000009_12432736_12435509
CI01000009_13394582_13476351.mRNA mRNA downstream 34186 13392306 ~ 13476807 (+) True CI01000009_13394582_13476351
CI01000009_13549003_13580198.mRNA mRNA downstream 190883 13549003 ~ 13580233 (+) True CI01000009_13549003_13580198
CI01000009_13696525_13718933.mRNA mRNA downstream 338405 13696525 ~ 13718933 (+) True CI01000009_13696525_13718933
CI01000009_13752424_13753460.mRNA mRNA downstream 394304 13752424 ~ 13753823 (+) True CI01000009_13752424_13753460
CI01000009_13798741_13799037.mRNA mRNA downstream 438764 13796884 ~ 13799191 (+) True CI01000009_13798741_13799037
TU66091 other upstream 214310 13140378 ~ 13143608 (+) True G58028
TU65732 other upstream 334780 13006643 ~ 13023138 (+) True G57701
TU65722 other upstream 439453 12906444 ~ 12918465 (+) True G57691
TU65711 other upstream 465579 12825469 ~ 12892339 (+) False G57682
TU66469 other downstream 675439 14039798 ~ 14039901 (+) True G58382
TU66462 other downstream 681218 14039757 ~ 14039901 (+) True G58382
TU66583 other downstream 888575 14246695 ~ 14258526 (+) True G58455
TU66694 other downstream 1138816 14496936 ~ 14500423 (+) False G58558
TU66695 other downstream 1138929 14497049 ~ 14501514 (+) True G58558

Expression Profile