RNA id: TU66754


Basic Information

Item Value
RNA id TU66754
length 292
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G58614
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 14585315 ~ 14585606 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCCGATTCACAACGGTAAGATTGTAATAATGTTTTATAATTCAGCTGGTACTGGTGGGTTTTCGCGGGAAATTCGAGCATGCAGCCGTTCGTCTTTGTGTCATTACGTCACATCTGTTTACATAAAGAACAAGTCCCAGCTAGTAGGCTATTGCATGTGAGGCGGATCATTTATAGCCTTTTCTCACAGCAGCTGCAATAATTAAACTTATCATTTTGATGGCAGATTATATGGTATGACAAATTAAAGGGATAGTTCACCCAAAAATGAAAATTTGATGTTTATCTGCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66753 lncRNA upstream 34 14585056 ~ 14585281 (+) True G58613
TU66705 lncRNA upstream 539 14573262 ~ 14584776 (+) True G58568
TU66731 lncRNA upstream 3054 14548250 ~ 14582261 (+) True G58591
TU66692 lncRNA upstream 85069 14496936 ~ 14500246 (+) False G58558
TU66693 lncRNA upstream 85069 14497049 ~ 14500246 (+) False G58558
TU66755 lncRNA downstream 84 14585690 ~ 14585910 (+) True G58615
TU66756 lncRNA downstream 515 14586121 ~ 14586586 (+) True G58616
TU66758 lncRNA downstream 4085 14589691 ~ 14590156 (+) True G58618
TU66759 lncRNA downstream 4695 14590301 ~ 14590678 (+) True G58619
TU66760 lncRNA downstream 7047 14592653 ~ 14592886 (+) True G58620
CI01000009_14581261_14582899.mRNA mRNA upstream 2321 14580880 ~ 14582994 (+) True CI01000009_14581261_14582899
CI01000009_14474300_14474593.mRNA mRNA upstream 110545 14474300 ~ 14474770 (+) False CI01000009_14474300_14474593
CI01000009_14432830_14450364.mRNA mRNA upstream 133773 14432716 ~ 14451542 (+) True CI01000009_14432830_14450364
CI01000009_14380226_14386430.mRNA mRNA upstream 198449 14380226 ~ 14386866 (+) True CI01000009_14380226_14386430
CI01000009_14348389_14374515.mRNA mRNA upstream 209632 14348389 ~ 14375683 (+) True CI01000009_14348389_14374515
CI01000009_14595691_14611767.mRNA mRNA downstream 9830 14595436 ~ 14612569 (+) False CI01000009_14595691_14611767
CI01000009_14616605_14620028.mRNA mRNA downstream 29765 14615371 ~ 14620238 (+) True CI01000009_14616605_14620028
CI01000009_14659692_14664324.mRNA mRNA downstream 73573 14659179 ~ 14664333 (+) True CI01000009_14659692_14664324
CI01000009_14682045_14685381.mRNA mRNA downstream 96048 14681654 ~ 14685420 (+) True CI01000009_14682045_14685381
CI01000009_14857765_14859526.mRNA mRNA downstream 272107 14857713 ~ 14859636 (+) False CI01000009_14857765_14859526
TU66695 other upstream 83801 14497049 ~ 14501514 (+) True G58558
TU66694 other upstream 84892 14496936 ~ 14500423 (+) False G58558
TU66583 other upstream 326789 14246695 ~ 14258526 (+) True G58455
TU66469 other upstream 545414 14039798 ~ 14039901 (+) True G58382
TU66789 other downstream 64118 14649724 ~ 14652022 (+) True G58649
TU66854 other downstream 181053 14766659 ~ 14773773 (+) False G58711
TU66856 other downstream 182334 14767940 ~ 14771757 (+) True G58711
TU66845 other downstream 233613 14819219 ~ 14837553 (+) True G58702
TU66834 other downstream 339623 14955242 ~ 14955795 (+) True G58694

Expression Profile