RNA id: TU66761


Basic Information

Item Value
RNA id TU66761
length 327
lncRNA type intronic
GC content 0.46
exon number 1
gene id G58621
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 14597085 ~ 14597411 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGACATGTGAGCAAGTAAGACATGCTGCTGCTGTACAAATTAGCATTCATGAAGTACCCTTAGCAGATCGATACAGGTGGAGCTGGGGAAGGTGGAGGGTTTCTAAAAGTGCGCTGCAACTGCTACAGCAAATGCTGACTTTATTGTATTTGAAGGTTGAGCAGCGAGCTCATTGGCTACTGAAACAGCAGGAACCAATCTGCTGTGCCCTATAGAGAATATGCAGGGGTGCAAATAAACTATGCGCACCAGAAAACGGAGGGAAGCGCTTTTGAGTACCAACGTTTTTGAGGACCGGTTCACACACTGTAAAAAATATTCCGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66760 lncRNA upstream 4199 14592653 ~ 14592886 (+) True G58620
TU66759 lncRNA upstream 6407 14590301 ~ 14590678 (+) True G58619
TU66758 lncRNA upstream 6929 14589691 ~ 14590156 (+) True G58618
TU66756 lncRNA upstream 10499 14586121 ~ 14586586 (+) True G58616
TU66755 lncRNA upstream 11175 14585690 ~ 14585910 (+) True G58615
TU66762 lncRNA downstream 178 14597589 ~ 14597902 (+) True G58622
TU66763 lncRNA downstream 856 14598267 ~ 14598482 (+) True G58623
TU66769 lncRNA downstream 8747 14606158 ~ 14606777 (+) True CI01000009_14595691_14611767
TU66770 lncRNA downstream 9675 14607086 ~ 14608066 (+) True G58630
TU66771 lncRNA downstream 11595 14609006 ~ 14609341 (+) True G58631
CI01000009_14581261_14582899.mRNA mRNA upstream 14091 14580880 ~ 14582994 (+) True CI01000009_14581261_14582899
CI01000009_14474300_14474593.mRNA mRNA upstream 122315 14474300 ~ 14474770 (+) False CI01000009_14474300_14474593
CI01000009_14432830_14450364.mRNA mRNA upstream 145543 14432716 ~ 14451542 (+) True CI01000009_14432830_14450364
CI01000009_14380226_14386430.mRNA mRNA upstream 210219 14380226 ~ 14386866 (+) True CI01000009_14380226_14386430
CI01000009_14348389_14374515.mRNA mRNA upstream 221402 14348389 ~ 14375683 (+) True CI01000009_14348389_14374515
CI01000009_14616605_14620028.mRNA mRNA downstream 17960 14615371 ~ 14620238 (+) True CI01000009_14616605_14620028
CI01000009_14659692_14664324.mRNA mRNA downstream 61768 14659179 ~ 14664333 (+) True CI01000009_14659692_14664324
CI01000009_14682045_14685381.mRNA mRNA downstream 84243 14681654 ~ 14685420 (+) True CI01000009_14682045_14685381
CI01000009_14857765_14859526.mRNA mRNA downstream 260302 14857713 ~ 14859636 (+) False CI01000009_14857765_14859526
CI01000009_14862429_14898325.mRNA mRNA downstream 264321 14861732 ~ 14898549 (+) True CI01000009_14862429_14898325
TU66695 other upstream 95571 14497049 ~ 14501514 (+) True G58558
TU66694 other upstream 96662 14496936 ~ 14500423 (+) False G58558
TU66583 other upstream 338559 14246695 ~ 14258526 (+) True G58455
TU66469 other upstream 557184 14039798 ~ 14039901 (+) True G58382
TU66789 other downstream 52313 14649724 ~ 14652022 (+) True G58649
TU66854 other downstream 169248 14766659 ~ 14773773 (+) False G58711
TU66856 other downstream 170529 14767940 ~ 14771757 (+) True G58711
TU66845 other downstream 221808 14819219 ~ 14837553 (+) True G58702
TU66834 other downstream 327818 14955242 ~ 14955795 (+) True G58694

Expression Profile