RNA id: TU66763


Basic Information

Item Value
RNA id TU66763
length 216
lncRNA type intronic
GC content 0.44
exon number 1
gene id G58623
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 14598267 ~ 14598482 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TACGGATAAGGTCCAACGGTTCAGCACGCATGTGATTCGCAGATTAACTGCTAAATTTAACCATTCATAGAGTGAAAGTTTATCATTTGGACGTGTTTTGTCTCGCCAATTAACACATTCAAATGATTTTAAAAGCGGAAGAAGAGGTGAAAATCGGGACTCGCAAGTTATCTGTGCGCACAGCCTCACACCCCCGAAACGTGCGCTCAAACACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66762 lncRNA upstream 365 14597589 ~ 14597902 (+) True G58622
TU66761 lncRNA upstream 856 14597085 ~ 14597411 (+) True G58621
TU66760 lncRNA upstream 5381 14592653 ~ 14592886 (+) True G58620
TU66759 lncRNA upstream 7589 14590301 ~ 14590678 (+) True G58619
TU66758 lncRNA upstream 8111 14589691 ~ 14590156 (+) True G58618
TU66769 lncRNA downstream 7676 14606158 ~ 14606777 (+) True CI01000009_14595691_14611767
TU66770 lncRNA downstream 8604 14607086 ~ 14608066 (+) True G58630
TU66771 lncRNA downstream 10524 14609006 ~ 14609341 (+) True G58631
TU66710 lncRNA downstream 12420 14610902 ~ 14676373 (+) True G58572
TU66816 lncRNA downstream 105997 14704479 ~ 14710140 (+) True G58676
CI01000009_14581261_14582899.mRNA mRNA upstream 15273 14580880 ~ 14582994 (+) True CI01000009_14581261_14582899
CI01000009_14474300_14474593.mRNA mRNA upstream 123497 14474300 ~ 14474770 (+) False CI01000009_14474300_14474593
CI01000009_14432830_14450364.mRNA mRNA upstream 146725 14432716 ~ 14451542 (+) True CI01000009_14432830_14450364
CI01000009_14380226_14386430.mRNA mRNA upstream 211401 14380226 ~ 14386866 (+) True CI01000009_14380226_14386430
CI01000009_14348389_14374515.mRNA mRNA upstream 222584 14348389 ~ 14375683 (+) True CI01000009_14348389_14374515
CI01000009_14616605_14620028.mRNA mRNA downstream 16889 14615371 ~ 14620238 (+) True CI01000009_14616605_14620028
CI01000009_14659692_14664324.mRNA mRNA downstream 60697 14659179 ~ 14664333 (+) True CI01000009_14659692_14664324
CI01000009_14682045_14685381.mRNA mRNA downstream 83172 14681654 ~ 14685420 (+) True CI01000009_14682045_14685381
CI01000009_14857765_14859526.mRNA mRNA downstream 259231 14857713 ~ 14859636 (+) False CI01000009_14857765_14859526
CI01000009_14862429_14898325.mRNA mRNA downstream 263250 14861732 ~ 14898549 (+) True CI01000009_14862429_14898325
TU66695 other upstream 96753 14497049 ~ 14501514 (+) True G58558
TU66694 other upstream 97844 14496936 ~ 14500423 (+) False G58558
TU66583 other upstream 339741 14246695 ~ 14258526 (+) True G58455
TU66469 other upstream 558366 14039798 ~ 14039901 (+) True G58382
TU66789 other downstream 51242 14649724 ~ 14652022 (+) True G58649
TU66854 other downstream 168177 14766659 ~ 14773773 (+) False G58711
TU66856 other downstream 169458 14767940 ~ 14771757 (+) True G58711
TU66845 other downstream 220737 14819219 ~ 14837553 (+) True G58702
TU66834 other downstream 326747 14955242 ~ 14955795 (+) True G58694

Expression Profile