RNA id: TU66789



Basic Information


Item Value
RNA id TU66789
length 2263
RNA type TUCP
GC content 0.42
exon number 2
gene id G58649
representative True

Chromosome Information


Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 14649724 ~ 14652022 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATATTGAACCACTGTACTCACATGAACTGATTTAAATATGTTTTTAGTACATTAATGGATCTTGAGAGAGGAAATGTCATTGCTGGCTATGCAGGCCTCACTGAGCCATCGGATTTAATCAAAAATATCTAATTTCTTTGTTTTTTGTTTTGTTTTAAAATCCATGTCATGACCCCTTTAATATGTCGGGAAAAACATGGGGTGTACTTACGTTTCCACAGCACGATTTATTAACCATCAGCTCATGTTCCTCCTAGTTTACCTTCAAAGAAGCACGTGTAACAAGTAGCTGCTTCAGTTCTGAGTGGGCTGTGACGAAGGCGGAGAGCTTTTGCAAGAATCCCACCTTAAGTCTGTTTGTTCTGCATTTCCACATTTGTGGCATAATAGGGTCCAGAAGGATTTTTGGTTGAGCCTACGATGAGCTCATAAAATCTGGATCCCATCTGACAACAAAAGCCCCCCCAGTTGCATCTAATCTGGGAAGAAGCGAACGTCTACGGCGTGAAAGCAACCATCGCAGATGTGTATGTCTATGACCCTTTAGCAGCTGGACTAATGTTCAGAACGGTTGACCCAGGCCATCTCCTCTAACAGCAGGAAGGATGAACCTTCACTCGTAACACCAACATGTTTGGCTTGTTTAACAGCCTGGCAGTTTCCTTTCCCAGCACTATGAGCGAGCATTAATGAAGTTTCGCTGTAGAACAACAGAAGCAATTCAGGATGGAGGGGGGACGCGACCAGCCTGCCTCTTTCCAAAGCTCTTCCTACGCGCACCACTCAGCTCCATGGCAACTCGCAGCGAGAAGGCCAGAGTGATACAATACGGGACTTTCACTTCCTGTCATAAAAGCCTCAGCGCAGTTTTTTTCATGATCCTTTGTGAAACAATAACAGGCCTGTTTTGGTTTCCACACATATCGCTCAGGGTCATGTCTCATCTGAACCTCCACCGCGAGGAGGTGAGAAAACGACAGTGGAAAGATAACCTTTACTCCATAACAGTTAGAACTGAAAATGAGAAACTCGCTTTCAAAAGCTCCCAGCATGCCTCACACTCGAAAGATGGTCTCTAAAGGCCTTTTCACATGATTCGCATCAACTTGCCCAATACATCGAACTCTATGGAGAGAAGTCCTCAAAAGACTTAAACTCATTTGCCACTGACCTTTTGAAGTGCAGCCGATGATAACAGACCAATTGTGTATTCGATGTGGCTTTGCAATGACAGGTCAAGTTCTGCAACTACAGAGGTTTCTGACTTTCACACAATTTTTCCATGCTAATAATGAATAATTTTAGTTTAAATGTAGTGCACATCCTGAATGTCTCAATTTACATTTATGCATTTATATTTACCTTCATATTTTAACACACAGAGTTTATTTTAATTAATAACTGTAAATTTAAATGAAATTAGCCACAATGTATCAGAAGTTAGATTGGAATTTGAACTGGAATAACAGAAAGAGGAATTTACTGAATTGCAATTCAAAGAAATTCAACACAGGTAATGTACGCGGCTATATCTGCCCATCCATCTGTCTGTCTGTCTATTCATCCATCCATCTATCTGTTTGTCTGTCTGTGTCTGTTCATCAATCCATCCAACCATCCATCCATCCATCCATGTCTGTCTGTCTGTCCGTCCGTCCGTCCGTATTTCTGTCTATCTTTCTATCCGTTTGTCTGTCCATCCATCCATCTATCTATCTATCTATCACAGGTAATGCACGCAGGTATATCTGCCCATCCGTCTGTCTGTCTATTTATCCCTCTGTCTGTCCATCCATCTATCTACCCGTCTGTCTGTCTATCCATCCATTGATCTATCTGTTTGTTTGTCTGTCTGTCTATTCATCCATCCATTAATCTATGTCTGTCCATCCGTCTATATGTCTGTCTATCTTTCTAGCCATCCATCCATCCATCTATCCATCCATCACAGGCAATGCACGCGGGTATATCTGCCCATCCGTCCATCTGTCTGTCTATTTATCCATCTGCCTGTCCATCCATCTATCTATCTATCTATCCATCTGTCTGTCCATCCATCCATCCATCTATCCATCCATCCATGTCTGTCTGTCCATCCATCTGTCTGTCCGTCTTTCCATCCATCCATCCATCTACCTACCTACCTATCTGTCTGTCTCATTTGTTCTTTCTTTTGTTCTTTCATTCATTTCATCTATTTATGTTTCTTTCTAGTATTTTTGAACTTTTAAACAAGGGTTTGTCAAGTCAACATTTAAAGTTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU66771 lncRNA upstream 40383 14609006 ~ 14609341 (+) True G58631
TU66770 lncRNA upstream 41658 14607086 ~ 14608066 (+) True G58630
TU66769 lncRNA upstream 42947 14606158 ~ 14606777 (+) True CI01000009_14595691_14611767
TU66763 lncRNA upstream 51242 14598267 ~ 14598482 (+) True G58623
TU66762 lncRNA upstream 51822 14597589 ~ 14597902 (+) True G58622
TU66816 lncRNA downstream 52457 14704479 ~ 14710140 (+) True G58676
TU66826 lncRNA downstream 68866 14720888 ~ 14721094 (+) True G58686
TU66861 lncRNA downstream 111800 14763822 ~ 14764679 (+) True G58713
TU66838 lncRNA downstream 123915 14775937 ~ 14777316 (+) True G58695
TU66884 lncRNA downstream 160994 14813016 ~ 14813280 (+) True G58735
CI01000009_14616605_14620028.mRNA mRNA upstream 29486 14615371 ~ 14620238 (+) True CI01000009_14616605_14620028
CI01000009_14595691_14611767.mRNA mRNA upstream 37155 14595436 ~ 14612569 (+) False CI01000009_14595691_14611767
CI01000009_14581261_14582899.mRNA mRNA upstream 66730 14580880 ~ 14582994 (+) True CI01000009_14581261_14582899
CI01000009_14474300_14474593.mRNA mRNA upstream 174954 14474300 ~ 14474770 (+) False CI01000009_14474300_14474593
CI01000009_14432830_14450364.mRNA mRNA upstream 198182 14432716 ~ 14451542 (+) True CI01000009_14432830_14450364
CI01000009_14659692_14664324.mRNA mRNA downstream 7157 14659179 ~ 14664333 (+) True CI01000009_14659692_14664324
CI01000009_14682045_14685381.mRNA mRNA downstream 29632 14681654 ~ 14685420 (+) True CI01000009_14682045_14685381
CI01000009_14857765_14859526.mRNA mRNA downstream 205691 14857713 ~ 14859636 (+) False CI01000009_14857765_14859526
CI01000009_14862429_14898325.mRNA mRNA downstream 209710 14861732 ~ 14898549 (+) True CI01000009_14862429_14898325
CI01000009_14916323_14920716.mRNA mRNA downstream 264243 14916265 ~ 14920795 (+) True CI01000009_14916323_14920716
TU66695 other upstream 148210 14497049 ~ 14501514 (+) True G58558
TU66694 other upstream 149301 14496936 ~ 14500423 (+) False G58558
TU66583 other upstream 391198 14246695 ~ 14258526 (+) True G58455
TU66469 other upstream 609823 14039798 ~ 14039901 (+) True G58382
TU66462 other upstream 609823 14039757 ~ 14039901 (+) True G58382
TU66854 other downstream 114637 14766659 ~ 14773773 (+) False G58711
TU66856 other downstream 115918 14767940 ~ 14771757 (+) True G58711
TU66845 other downstream 167197 14819219 ~ 14837553 (+) True G58702
TU66834 other downstream 273207 14955242 ~ 14955795 (+) True G58694
TU68340 other downstream 700025 15352047 ~ 15376169 (+) False G60028

Expression Profile