RNA id: TU68101


Basic Information

Item Value
RNA id TU68101
length 895
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G59818
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 14889076 ~ 14891213 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCTAATAAACCTCCAAAGGTGATAGTGGGCGAAAGAGCAGCAAAATAAATGAAAATGACAGCAGCAAAACATTGTGTGTCCATGGCGTCCTTCAGGTCGCTTATGTAGCGTGGATAACGGCGGCGAATATCGTGGATCAGACCTCCAAAGGGAATACCAGAGCGCTTGAGAGGGTCAACATCAAACTGATCCTCCTCCTCCTGTTCATCCGTACTCACGTCTTTGGTCTCCTGCTCAGCTCCTGTAACAGTACTGCCGCATTTTTTGTACTCCCTCTCTTTGCGCTTGCGTAGCATCTGTTTCTGGAAGGAGGCCACGGTCTTCAGCAGGTCTTTTCCCTCAACGTCCGATGGTGGAATTACAATACTGCAGTCTAAGAACTCATTGATTCCATTAAGCAGGTCCTGGCGGTCATCAGCAAAGTATGCTACCTCATGGAAGTTCTGTGGAAGGTCAAGAAAAACAGTGAAAATGAGTGGTTTAACAGTTACAAGGAGATTGAATTGCTTAGAAACTTTTGACCAGTTGGTTGCAGTCCTGAAACTTCTCATCAGGCCATGGTCTTAATGACACATGCAAAGTTTCATTTCAAAATGCAACAGCAAAGCCAAGACAAAGTCTCACTTCCAGTCTGTTGGCATTGTTGTCACATTTATTTGAGATTTACTGTAGAAAGGGTTGAAAATCAAACATCTCTATGATCTTTTTTGTGAGGCTTGGTCTAAAGATCATTTAATCTTCTCCAAAATAGACAACAGTTTTCAATAAACTTCTATATGGCGGATGGGCCATAATTTGAAACTTGACAAATGGGCTATCATATGACAGAATGGAGGAATAGGAGAAAACCAGAATCATAATTTTGGGTCAAGGCATTCTGAAGTTATGATTAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68074 lncRNA downstream 75953 14814079 ~ 14814284 (-) True G59794
TU68045 lncRNA downstream 153956 14736017 ~ 14736281 (-) True G59768
TU68031 lncRNA downstream 173905 14716118 ~ 14716332 (-) True G59754
TU67858 lncRNA downstream 179044 14614098 ~ 14711193 (-) True G59590
TU68108 lncRNA upstream 85476 14976689 ~ 14977258 (-) True G59821
TU68190 lncRNA upstream 199741 15090954 ~ 15091746 (-) True G59898
TU68191 lncRNA upstream 201261 15092474 ~ 15092737 (-) True G59899
TU68208 lncRNA upstream 211390 15102603 ~ 15102820 (-) True G59913
TU68222 lncRNA upstream 222546 15113759 ~ 15113970 (-) True G59927
CI01000009_14776978_14779978.mRNA mRNA downstream 108284 14776859 ~ 14781953 (-) True CI01000009_14776978_14779978
CI01000009_14763341_14773678.mRNA mRNA downstream 116556 14763212 ~ 14773681 (-) True CI01000009_14763341_14773678
CI01000009_14626182_14652953.mRNA mRNA downstream 236978 14625831 ~ 14653259 (-) True CI01000009_14626182_14652953
CI01000009_14476688_14573629.mRNA mRNA downstream 316608 14475724 ~ 14573629 (-) False CI01000009_14476688_14573629
CI01000009_14342067_14344332.mRNA mRNA downstream 545303 14341987 ~ 14344934 (-) True CI01000009_14342067_14344332
CI01000009_14905408_14907785.mRNA mRNA upstream 13276 14904489 ~ 14908077 (-) True CI01000009_14905408_14907785
CI01000009_14961220_14973307.mRNA mRNA upstream 69767 14960980 ~ 14973405 (-) True CI01000009_14961220_14973307
CI01000009_14974529_14974816.mRNA mRNA upstream 82829 14974042 ~ 14975420 (-) True CI01000009_14974529_14974816
CI01000009_15229965_15235247.mRNA mRNA upstream 338444 15229657 ~ 15235528 (-) True CI01000009_15229965_15235247
CI01000009_15301177_15304489.mRNA mRNA upstream 409884 15301097 ~ 15304500 (-) True CI01000009_15301177_15304489
TU68092 other downstream 2773 14862397 ~ 14887464 (-) True G59811
TU67748 other downstream 852364 14033564 ~ 14037873 (-) True G59490
TU67750 other downstream 911623 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026
TU67286 other downstream 2600719 12288217 ~ 12289518 (-) False G59097
TU68236 other upstream 240891 15132104 ~ 15132503 (-) True G59941
TU68714 other upstream 485047 15376260 ~ 15443047 (-) True G60362
TU68711 other upstream 755562 15646775 ~ 15651888 (-) True G60359

Expression Profile