RNA id: TU68232


Basic Information

Item Value
RNA id TU68232
length 297
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G59937
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 15128835 ~ 15129131 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTGCAGCCTTTAGCCTCCTCATTTGAGTGTCCGACTCCCACGCCAGAGACCCAGGTTCGAGGCCCGCGTAGAGCGGGGCGAGTAGGACCTGGGTAGAGGGGTTACATTGGTGCTGTGACCCGGATGAGAGTGAGGTTTAGGGGGGTGAGTGCAACAGAGGCCAGCTAGTAGTCGCTGTGCGAGTAAACCTCCTCTGATCTCAAGAGATGCTCTAGTGACTGACACTAAAGGTTGCAGCCTTTAGCTTCCTCGTTAGAGCGTCCGACTCACATGCCAGAGACCCAGGTTCGAGGCCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68222 lncRNA downstream 14865 15113759 ~ 15113970 (-) True G59927
TU68208 lncRNA downstream 26015 15102603 ~ 15102820 (-) True G59913
TU68191 lncRNA downstream 36098 15092474 ~ 15092737 (-) True G59899
TU68190 lncRNA downstream 37089 15090954 ~ 15091746 (-) True G59898
TU68108 lncRNA downstream 151577 14976689 ~ 14977258 (-) True G59821
TU68235 lncRNA upstream 2478 15131609 ~ 15131869 (-) True G59940
TU68258 lncRNA upstream 22471 15151602 ~ 15152900 (-) False G59963
TU68259 lncRNA upstream 22471 15151602 ~ 15152900 (-) True G59963
TU68270 lncRNA upstream 34149 15163280 ~ 15163485 (-) True G59974
TU68298 lncRNA upstream 56133 15185264 ~ 15185484 (-) True G59996
CI01000009_14974529_14974816.mRNA mRNA downstream 153415 14974042 ~ 14975420 (-) True CI01000009_14974529_14974816
CI01000009_14961220_14973307.mRNA mRNA downstream 155430 14960980 ~ 14973405 (-) True CI01000009_14961220_14973307
CI01000009_14905408_14907785.mRNA mRNA downstream 220758 14904489 ~ 14908077 (-) True CI01000009_14905408_14907785
CI01000009_14776978_14779978.mRNA mRNA downstream 346882 14776859 ~ 14781953 (-) True CI01000009_14776978_14779978
CI01000009_14763341_14773678.mRNA mRNA downstream 355154 14763212 ~ 14773681 (-) True CI01000009_14763341_14773678
CI01000009_15229965_15235247.mRNA mRNA upstream 100526 15229657 ~ 15235528 (-) True CI01000009_15229965_15235247
CI01000009_15301177_15304489.mRNA mRNA upstream 171966 15301097 ~ 15304500 (-) True CI01000009_15301177_15304489
CI01000009_15318811_15390382.mRNA mRNA upstream 189680 15318811 ~ 15390382 (-) False CI01000009_15318811_15390382
CI01000009_15483720_15484321.mRNA mRNA upstream 354578 15483709 ~ 15484321 (-) True CI01000009_15483720_15484321
CI01000009_15504401_15585060.mRNA mRNA upstream 375215 15504346 ~ 15585829 (-) False CI01000009_15504401_15585060
TU68092 other downstream 241371 14862397 ~ 14887464 (-) True G59811
TU67748 other downstream 1090962 14033564 ~ 14037873 (-) True G59490
TU67750 other downstream 1150221 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026
TU67286 other downstream 2839317 12288217 ~ 12289518 (-) False G59097
TU68236 other upstream 2973 15132104 ~ 15132503 (-) True G59941
TU68714 other upstream 247129 15376260 ~ 15443047 (-) True G60362
TU68711 other upstream 517644 15646775 ~ 15651888 (-) True G60359

Expression Profile