RNA id: TU68236


Basic Information

Item Value
RNA id TU68236
length 400
RNA type TUCP
GC content 0.45
exon number 1
gene id G59941
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 15132104 ~ 15132503 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTATAGGTCAAAAAAGAAGCCATATCTAAACATGATCCAGAAGCACAGGCGTTTTCTCTGGGCCAAGGCTCATTTAAAATGGACCGTGGCAAAGTGGAAAACTGTTCTGTGGTCAGACGAATCAAAATTTGAAGTTCTTTTTGGAAAACTGGGACGCCATGTCATCCGGAGTAAAGAGGACAAGGACAACCCAAGTTGTTATCAGCGCTCAGTTCAGAAGCCTGCATCTCTGATGGTATGGGGTTGCATGAGTGCATGTGGCATGAGCAGCTTACACATCTGGAAAGGCACCATCAATGCTGAAAGGTATATCCAAGTTCTAGAACAACATATGCTCCCATCCAGACGTCGTCTCTTTCAGGGAAGACCTTGCATTTTCCAACATGACAATGCCAGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68235 lncRNA downstream 235 15131609 ~ 15131869 (-) True G59940
TU68232 lncRNA downstream 2973 15128835 ~ 15129131 (-) True G59937
TU68222 lncRNA downstream 18134 15113759 ~ 15113970 (-) True G59927
TU68208 lncRNA downstream 29284 15102603 ~ 15102820 (-) True G59913
TU68191 lncRNA downstream 39367 15092474 ~ 15092737 (-) True G59899
TU68258 lncRNA upstream 19099 15151602 ~ 15152900 (-) False G59963
TU68259 lncRNA upstream 19099 15151602 ~ 15152900 (-) True G59963
TU68270 lncRNA upstream 30777 15163280 ~ 15163485 (-) True G59974
TU68298 lncRNA upstream 52761 15185264 ~ 15185484 (-) True G59996
TU68737 lncRNA upstream 84576 15217079 ~ 15217280 (-) True G60384
CI01000009_14974529_14974816.mRNA mRNA downstream 156684 14974042 ~ 14975420 (-) True CI01000009_14974529_14974816
CI01000009_14961220_14973307.mRNA mRNA downstream 158699 14960980 ~ 14973405 (-) True CI01000009_14961220_14973307
CI01000009_14905408_14907785.mRNA mRNA downstream 224027 14904489 ~ 14908077 (-) True CI01000009_14905408_14907785
CI01000009_14776978_14779978.mRNA mRNA downstream 350151 14776859 ~ 14781953 (-) True CI01000009_14776978_14779978
CI01000009_14763341_14773678.mRNA mRNA downstream 358423 14763212 ~ 14773681 (-) True CI01000009_14763341_14773678
CI01000009_15229965_15235247.mRNA mRNA upstream 97154 15229657 ~ 15235528 (-) True CI01000009_15229965_15235247
CI01000009_15301177_15304489.mRNA mRNA upstream 168594 15301097 ~ 15304500 (-) True CI01000009_15301177_15304489
CI01000009_15318811_15390382.mRNA mRNA upstream 186308 15318811 ~ 15390382 (-) False CI01000009_15318811_15390382
CI01000009_15483720_15484321.mRNA mRNA upstream 351206 15483709 ~ 15484321 (-) True CI01000009_15483720_15484321
CI01000009_15504401_15585060.mRNA mRNA upstream 371843 15504346 ~ 15585829 (-) False CI01000009_15504401_15585060
TU68092 other downstream 244640 14862397 ~ 14887464 (-) True G59811
TU67748 other downstream 1094231 14033564 ~ 14037873 (-) True G59490
TU67750 other downstream 1153490 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026
TU67286 other downstream 2842586 12288217 ~ 12289518 (-) False G59097
TU67287 other downstream 2843127 12288217 ~ 12288977 (-) True G59097
TU68714 other upstream 243757 15376260 ~ 15443047 (-) True G60362
TU68711 other upstream 514272 15646775 ~ 15651888 (-) True G60359

Expression Profile