RNA id: TU68503


Basic Information

Item Value
RNA id TU68503
length 915
lncRNA type intronic
GC content 0.41
exon number 2
gene id G60187
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 15507840 ~ 15509141 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCAAGTGACAGTTAAAGGAATAGTTCACCTAAAAATGACAGGGTTGTCATCGTTTACTGACCAATTGGAATGTCCGAGCTGCTCTTTTCCATACAATGAAAGTAGATGGTAATTTATTCCATCAAGCTCCAAAAAGGACAACAATCATGAAAGTTTTAGGAGACATAAAAATGGACACAAACGAGAATATGAGAATTGGATGAGAAATATTTGAGTTTAAGGGGGTCCTTGATTATGATTTCATTTTTTAATTTTAGTTAGTGTGTAATGTTGCTGTTTGAGCATAAACAACATCTGCAAAGTTACGACGCTCAAAGTTCAATGCAAAGGGAGATATTTTCTTTTAAAGAAATCGCTTTTTAAGGAAAACAACAAACAGCTGGTAGGGACTACAATGAGCTTCTTCCCGGGTTGGTGACATCACAAACCCTAAAATTTACATAAACTCCGCCCCCGAGAACACGCAACAAAGGGGGTGAGGCCATGTTGGGCTGCTTTAGAGAAGAGGAAGAGTTGTTGTAGTAGAGTGTTGTTGTCATGCCGTCATTTTACGCTGGACTGCTTCACAAACGAGGGTCAATTCAACGCTGGATTTGTACAAAAGATTAATATGACGGCACATGCTAGTCGATGAGTTGAATCAACTCCACAGCAACTACATAAATTTATCCACTAATCATTCAGAAACGTCCAGTTTCATTCTAAAAGTTGTAACTTCTTCCTGAGTCTCTCCATCAGTGTCCGACTCCGGTTTGAACAATGTAAGGCTGAACACCGTTACTGACAATCCTCATTTTGGCTGTGTGAGATTCTCCAGCTTTGTTGTTGTTGAGCAACTGAAGCGTGAGCTGTTAAAGCTCCGCCCTCTTCTGGAAAGGGGGCCGGGAACAGCAGCTCATTTGCATTTAAAGGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68333 lncRNA upstream 149203 15311518 ~ 15358637 (+) False G60027
TU68336 lncRNA upstream 164773 15311518 ~ 15343067 (+) False G60027
TU68337 lncRNA upstream 184240 15311518 ~ 15323600 (+) True G60027
TU68331 lncRNA upstream 186046 15311518 ~ 15321794 (+) False G60027
TU68330 lncRNA upstream 187122 15311518 ~ 15320718 (+) False G60027
TU68516 lncRNA downstream 18883 15528024 ~ 15529588 (+) True G60200
TU68526 lncRNA downstream 31471 15540612 ~ 15542007 (+) True G60209
TU68535 lncRNA downstream 44486 15553627 ~ 15553835 (+) True G60218
TU68536 lncRNA downstream 45213 15554354 ~ 15554696 (+) True G60219
TU68537 lncRNA downstream 45992 15555133 ~ 15555411 (+) True G60220
CI01000009_15415868_15427139.mRNA mRNA upstream 80642 15413174 ~ 15427198 (+) True CI01000009_15415868_15427139
CI01000009_14976078_14977321.mRNA mRNA upstream 530416 14975771 ~ 14977424 (+) True CI01000009_14976078_14977321
CI01000009_14925314_14952223.mRNA mRNA upstream 555269 14924621 ~ 14952571 (+) False CI01000009_14925314_14952223
CI01000009_14916323_14920716.mRNA mRNA upstream 587045 14916265 ~ 14920795 (+) True CI01000009_14916323_14920716
CI01000009_14862429_14898325.mRNA mRNA upstream 609291 14861732 ~ 14898549 (+) True CI01000009_14862429_14898325
CI01000009_15610515_15613753.mRNA mRNA downstream 100891 15610032 ~ 15613753 (+) True CI01000009_15610515_15613753
CI01000009_15625341_15626360.mRNA mRNA downstream 116018 15625159 ~ 15626403 (+) True CI01000009_15625341_15626360
CI01000009_15637754_15643935.mRNA mRNA downstream 128509 15637650 ~ 15643935 (+) True CI01000009_15637754_15643935
CI01000009_15667251_15668333.mRNA mRNA downstream 158110 15667251 ~ 15669450 (+) True CI01000009_15667251_15668333
CI01000009_15680573_15681601.mRNA mRNA downstream 171432 15680573 ~ 15681976 (+) True CI01000009_15680573_15681601
TU68340 other upstream 131671 15352047 ~ 15376169 (+) False G60028
TU68341 other upstream 149994 15352047 ~ 15357846 (+) True G60028
TU66834 other upstream 552045 14955242 ~ 14955795 (+) True G58694
TU66845 other upstream 649196 14819219 ~ 14837553 (+) True G58702
TU66854 other upstream 734067 14766659 ~ 14773773 (+) False G58711
TU68607 other downstream 198851 15707992 ~ 15712005 (+) True CI01000009_15708273_15712002
TU68648 other downstream 249038 15758179 ~ 15758310 (+) True G60302

Expression Profile