RNA id: TU68792


Basic Information

Item Value
RNA id TU68792
length 298
lncRNA type intronic
GC content 0.38
exon number 1
gene id G60439
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 15549582 ~ 15549879 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCCCACAGCGTGTATTTGGAAATTTTACTCTCCTTAAAGGTGAAGTGTGTAATTTCTGCTCTACTAGTTTCCCAAAAACTGGTCTGCCATTGGTCAGACTATTGAAACCGCAATTTTGTACGGGACATATTGGGGCTCCAATTTTTTTTTAGTCGCTAGGCTATAGTTATGTCAGATCTGACAGATATGTACTGAAAGCCACAAAACTTTTGATATAAAGGATTATGTTCACTTTCAAATAAAAATAAGCATAAGCTTCACTCACCCTCAAGCTTTACAATGGCAGACAACAGGGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68790 lncRNA downstream 1122 15548161 ~ 15548460 (-) True G60437
TU68731 lncRNA downstream 39230 15503406 ~ 15510352 (-) True CI01000009_15504401_15585060
TU68723 lncRNA downstream 229297 15311531 ~ 15320285 (-) True G60370
TU68783 lncRNA downstream 256897 15292447 ~ 15292685 (-) True G60430
TU68779 lncRNA downstream 261188 15288178 ~ 15288394 (-) True G60426
TU68795 lncRNA upstream 39778 15589657 ~ 15649377 (-) True G60442
TU68712 lncRNA upstream 112538 15662417 ~ 15662695 (-) True CI01000009_15654061_15662554
TU68828 lncRNA upstream 158125 15708004 ~ 15712147 (-) True G60468
TU68830 lncRNA upstream 168683 15718562 ~ 15719161 (-) True G60469
TU68729 lncRNA upstream 195589 15745468 ~ 15746486 (-) True G60376
CI01000009_15483720_15484321.mRNA mRNA downstream 65261 15483709 ~ 15484321 (-) True CI01000009_15483720_15484321
CI01000009_15318811_15390382.mRNA mRNA downstream 159200 15318811 ~ 15390382 (-) False CI01000009_15318811_15390382
CI01000009_15301177_15304489.mRNA mRNA downstream 245082 15301097 ~ 15304500 (-) True CI01000009_15301177_15304489
CI01000009_15229965_15235247.mRNA mRNA downstream 314054 15229657 ~ 15235528 (-) True CI01000009_15229965_15235247
CI01000009_14974529_14974816.mRNA mRNA downstream 574162 14974042 ~ 14975420 (-) True CI01000009_14974529_14974816
CI01000009_15654061_15662554.mRNA mRNA upstream 103881 15653760 ~ 15663026 (-) False CI01000009_15654061_15662554
CI01000009_15693066_15694538.mRNA mRNA upstream 143115 15692994 ~ 15694629 (-) True CI01000009_15693066_15694538
CI01000009_15716557_15721525.mRNA mRNA upstream 166598 15716477 ~ 15721596 (-) True CI01000009_15716557_15721525
CI01000009_15726357_15736168.mRNA mRNA upstream 176266 15726145 ~ 15736168 (-) True CI01000009_15726357_15736168
CI01000009_15784118_15789896.mRNA mRNA upstream 234201 15784080 ~ 15789896 (-) True CI01000009_15784118_15789896
TU68714 other downstream 106535 15376260 ~ 15443047 (-) True G60362
TU68236 other downstream 417079 15132104 ~ 15132503 (-) True G59941
TU68092 other downstream 662118 14862397 ~ 14887464 (-) True G59811
TU67748 other downstream 1511709 14033564 ~ 14037873 (-) True G59490
TU67750 other downstream 1570968 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026
TU68711 other upstream 96896 15646775 ~ 15651888 (-) True G60359

Expression Profile