RNA id: TU68536


Basic Information

Item Value
RNA id TU68536
length 343
lncRNA type intronic
GC content 0.31
exon number 1
gene id G60219
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 15554354 ~ 15554696 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGCTGTTTTTGCTGTAAATCTTGAAATTATATAATCATGGTTAAATCAAAAACAACAGCTCATGCTACAGGATCAAGCAAATTTGCTTGTAAAAAAATTGAAATCGGTGCATCACTAATAAAAAATATTAAATAAAACATTTAAAAAATGTAATAAAGTCTTTTCGCTGTAAAGGCAAATGCTATTCAAAGAGCAGTGTCTTTTTCTAGTTTTTCTTGCAAATTAAATTGTAGTTTGTTTGGCTAATATGAATGTAACTGTCAGCGCACTAAGGTTTAAAAAAGGTAATTCGGCCTGCGCATGGTTACATTTTTTCTTATCCGGCCCTCAACCTAAAATGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68535 lncRNA upstream 519 15553627 ~ 15553835 (+) True G60218
TU68526 lncRNA upstream 12347 15540612 ~ 15542007 (+) True G60209
TU68516 lncRNA upstream 24766 15528024 ~ 15529588 (+) True G60200
TU68503 lncRNA upstream 45213 15507840 ~ 15509141 (+) True G60187
TU68336 lncRNA upstream 211287 15311518 ~ 15343067 (+) False G60027
TU68537 lncRNA downstream 437 15555133 ~ 15555411 (+) True G60220
TU68538 lncRNA downstream 910 15555606 ~ 15555833 (+) True G60221
TU68539 lncRNA downstream 1823 15556519 ~ 15556901 (+) True G60222
TU68530 lncRNA downstream 107777 15662473 ~ 15662695 (+) True G60213
TU68597 lncRNA downstream 122786 15677482 ~ 15694591 (+) True G60280
CI01000009_15415868_15427139.mRNA mRNA upstream 127156 15413174 ~ 15427198 (+) True CI01000009_15415868_15427139
CI01000009_14976078_14977321.mRNA mRNA upstream 576930 14975771 ~ 14977424 (+) True CI01000009_14976078_14977321
CI01000009_14925314_14952223.mRNA mRNA upstream 601783 14924621 ~ 14952571 (+) False CI01000009_14925314_14952223
CI01000009_14916323_14920716.mRNA mRNA upstream 633559 14916265 ~ 14920795 (+) True CI01000009_14916323_14920716
CI01000009_14862429_14898325.mRNA mRNA upstream 655805 14861732 ~ 14898549 (+) True CI01000009_14862429_14898325
CI01000009_15610515_15613753.mRNA mRNA downstream 55336 15610032 ~ 15613753 (+) True CI01000009_15610515_15613753
CI01000009_15625341_15626360.mRNA mRNA downstream 70463 15625159 ~ 15626403 (+) True CI01000009_15625341_15626360
CI01000009_15637754_15643935.mRNA mRNA downstream 82954 15637650 ~ 15643935 (+) True CI01000009_15637754_15643935
CI01000009_15667251_15668333.mRNA mRNA downstream 112555 15667251 ~ 15669450 (+) True CI01000009_15667251_15668333
CI01000009_15680573_15681601.mRNA mRNA downstream 125877 15680573 ~ 15681976 (+) True CI01000009_15680573_15681601
TU68340 other upstream 178185 15352047 ~ 15376169 (+) False G60028
TU68341 other upstream 196508 15352047 ~ 15357846 (+) True G60028
TU66834 other upstream 598559 14955242 ~ 14955795 (+) True G58694
TU66845 other upstream 695710 14819219 ~ 14837553 (+) True G58702
TU66854 other upstream 780581 14766659 ~ 14773773 (+) False G58711
TU68607 other downstream 153296 15707992 ~ 15712005 (+) True CI01000009_15708273_15712002
TU68648 other downstream 203483 15758179 ~ 15758310 (+) True G60302

Expression Profile