RNA id: TU68539


Basic Information

Item Value
RNA id TU68539
length 353
lncRNA type intronic
GC content 0.40
exon number 2
gene id G60222
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 15556519 ~ 15556901 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATTCATTACACACAGACTGATATATTTCAAATGTTTATTTCTTTTCATTTTGATGATTATAACTGACAACTGAGGAAAATCCCAAATTCAGTATCTCAGAAAATTAGAATATTGTGAAAAGGTTCAATATTGAAGACACCTGGTGCCACACTCTAATCAGCTAATTAACTCAAAACACCTGCAAAGGCCTTTAAATGGTCTCTGTCTAGTTCTGTAGGCTACACAATCATGGGGACGACCACTGACACCTTGCACAAGGAGGGCAAGACACAAAAGGTCATTGCGAAAGAGGCTGGCTGTTCACAGAGCTCTGTGTCCAAGCCCATTAATAGAGAGGTGAAAGGGAAGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68538 lncRNA upstream 686 15555606 ~ 15555833 (+) True G60221
TU68537 lncRNA upstream 1108 15555133 ~ 15555411 (+) True G60220
TU68536 lncRNA upstream 1823 15554354 ~ 15554696 (+) True G60219
TU68535 lncRNA upstream 2684 15553627 ~ 15553835 (+) True G60218
TU68526 lncRNA upstream 14512 15540612 ~ 15542007 (+) True G60209
TU68530 lncRNA downstream 105572 15662473 ~ 15662695 (+) True G60213
TU68597 lncRNA downstream 120581 15677482 ~ 15694591 (+) True G60280
TU68603 lncRNA downstream 140878 15697779 ~ 15698147 (+) True G60286
TU68611 lncRNA downstream 191619 15748520 ~ 15749113 (+) True G60293
TU68650 lncRNA downstream 242780 15799681 ~ 15801256 (+) True G60303
CI01000009_15415868_15427139.mRNA mRNA upstream 129321 15413174 ~ 15427198 (+) True CI01000009_15415868_15427139
CI01000009_14976078_14977321.mRNA mRNA upstream 579095 14975771 ~ 14977424 (+) True CI01000009_14976078_14977321
CI01000009_14925314_14952223.mRNA mRNA upstream 603948 14924621 ~ 14952571 (+) False CI01000009_14925314_14952223
CI01000009_14916323_14920716.mRNA mRNA upstream 635724 14916265 ~ 14920795 (+) True CI01000009_14916323_14920716
CI01000009_14862429_14898325.mRNA mRNA upstream 657970 14861732 ~ 14898549 (+) True CI01000009_14862429_14898325
CI01000009_15610515_15613753.mRNA mRNA downstream 53131 15610032 ~ 15613753 (+) True CI01000009_15610515_15613753
CI01000009_15625341_15626360.mRNA mRNA downstream 68258 15625159 ~ 15626403 (+) True CI01000009_15625341_15626360
CI01000009_15637754_15643935.mRNA mRNA downstream 80749 15637650 ~ 15643935 (+) True CI01000009_15637754_15643935
CI01000009_15667251_15668333.mRNA mRNA downstream 110350 15667251 ~ 15669450 (+) True CI01000009_15667251_15668333
CI01000009_15680573_15681601.mRNA mRNA downstream 123672 15680573 ~ 15681976 (+) True CI01000009_15680573_15681601
TU68340 other upstream 180350 15352047 ~ 15376169 (+) False G60028
TU68341 other upstream 198673 15352047 ~ 15357846 (+) True G60028
TU66834 other upstream 600724 14955242 ~ 14955795 (+) True G58694
TU66845 other upstream 697875 14819219 ~ 14837553 (+) True G58702
TU66854 other upstream 782746 14766659 ~ 14773773 (+) False G58711
TU68607 other downstream 151091 15707992 ~ 15712005 (+) True CI01000009_15708273_15712002
TU68648 other downstream 201278 15758179 ~ 15758310 (+) True G60302

Expression Profile