RNA id: TU68530


Basic Information

Item Value
RNA id TU68530
length 223
lncRNA type antisense_over
GC content 0.42
exon number 1
gene id G60213
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 15662473 ~ 15662695 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCTCTTACCCGTTGCTCGCGCTGTCGAATTTGAGGCTGAGAGTCTCCTCTATGATCCGATTGTTGATTTCCAACAAAATCATGATGATTTAAATGAATGTTTAATGGCTATGTGGAATTAAAAATATAAGAGCAAATGTTGCTTTTCTACAATCCTACTACAATCGTTTTGGTTTTCCTGCTCCTAGACTTCCGGCCGCTTCCGCATTGACTCGAAAGACCCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68539 lncRNA upstream 105572 15556519 ~ 15556901 (+) True G60222
TU68538 lncRNA upstream 106640 15555606 ~ 15555833 (+) True G60221
TU68537 lncRNA upstream 107062 15555133 ~ 15555411 (+) True G60220
TU68536 lncRNA upstream 107777 15554354 ~ 15554696 (+) True G60219
TU68535 lncRNA upstream 108638 15553627 ~ 15553835 (+) True G60218
TU68597 lncRNA downstream 14787 15677482 ~ 15694591 (+) True G60280
TU68603 lncRNA downstream 35084 15697779 ~ 15698147 (+) True G60286
TU68611 lncRNA downstream 85825 15748520 ~ 15749113 (+) True G60293
TU68650 lncRNA downstream 136986 15799681 ~ 15801256 (+) True G60303
CI01000009_15637754_15643935.mRNA mRNA upstream 18538 15637650 ~ 15643935 (+) True CI01000009_15637754_15643935
CI01000009_15625341_15626360.mRNA mRNA upstream 36070 15625159 ~ 15626403 (+) True CI01000009_15625341_15626360
CI01000009_15610515_15613753.mRNA mRNA upstream 48720 15610032 ~ 15613753 (+) True CI01000009_15610515_15613753
CI01000009_15415868_15427139.mRNA mRNA upstream 235275 15413174 ~ 15427198 (+) True CI01000009_15415868_15427139
CI01000009_14976078_14977321.mRNA mRNA upstream 685049 14975771 ~ 14977424 (+) True CI01000009_14976078_14977321
CI01000009_15667251_15668333.mRNA mRNA downstream 4556 15667251 ~ 15669450 (+) True CI01000009_15667251_15668333
CI01000009_15680573_15681601.mRNA mRNA downstream 17878 15680573 ~ 15681976 (+) True CI01000009_15680573_15681601
CI01000009_15708273_15712002.mRNA mRNA downstream 43765 15706460 ~ 15712002 (+) False CI01000009_15708273_15712002
CI01000009_15738136_15745816.mRNA mRNA downstream 75377 15738072 ~ 15745866 (+) True CI01000009_15738136_15745816
CI01000009_15770057_15782295.mRNA mRNA downstream 107362 15770057 ~ 15782427 (+) False CI01000009_15770057_15782295
TU68340 other upstream 286304 15352047 ~ 15376169 (+) False G60028
TU68341 other upstream 304627 15352047 ~ 15357846 (+) True G60028
TU66834 other upstream 706678 14955242 ~ 14955795 (+) True G58694
TU66845 other upstream 803829 14819219 ~ 14837553 (+) True G58702
TU66854 other upstream 888700 14766659 ~ 14773773 (+) False G58711
TU68607 other downstream 45297 15707992 ~ 15712005 (+) True CI01000009_15708273_15712002
TU68648 other downstream 95484 15758179 ~ 15758310 (+) True G60302

Expression Profile