RNA id: TU68597



Basic Information


Item Value
RNA id TU68597
length 1044
lncRNA type read_through
GC content 0.42
exon number 2
gene id G60280
representative True

Chromosome Information


Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 15677482 ~ 15694591 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGAAATCAGCCAGCAAGTATCGGATAATTTCCACTGAATGATTCCTAAACCCCAGACAAGCAGGCCTGATAAATCTCAGTAAAATCACAAAAGATAAAACGATGATCTTCTGTGGAAGTTCTGCAAAAGCTTCAGCAATTGCCTCAGCCACATCATCAGGAAGCTGACCAAAGAGAGTGCCCAGAGACATGATGATGACACCATGCTCACCAGAGCTCTGCACAAAGTCCTCCAGGTCTTGTGGAAGAGGCATTGATGGCTTGCACTGAAAACCTCCAATGTAGACAATGTTCGGCATAGTGGGACGTGGAAATTCAAAAATAAAATCAGCTCTATGGAGCCACAGATCAGCACCCTGAAGTAAAGATAAGTAGGATGTTCCTGGGCCAATGAAACGTTCACAAAGTGCATTATAAGTTGGAGTAATCATGATAGCTAGCTTTATTTCTGGTATGATGTACATCACAACATTCTTCACTCTTTCCAAGAAACTCATGCGGTCTGATAACTCCAGCATTGAAGCAGGAATATAAGAAAGTGGTGAAGGAGCTATTACAAAATGAGCCTCACTGTAAACTGTCCAACGGACATTGTAGACAATGGGCAGTTTGAGATAATGACCCAATAGGACACCTCCAAACATGGCTGGATCTGTTAGAATCAAATCATATTTGGAATCTTTTAAGGACCGCATTAGCTGCTGGTCTTCAAACATGTTGATTATAATCTTGTTTTCTACTTCAAGCATCCCTAAGAAACTTTTCCACATTATTAAGTCCAGCTTCAGACGAGCCCAGATCGAACCCTCCCTCATAATTCCCATTAGTCTGGATGCAAATGTCTCGAGTAATTCTTCACTAAATCCTCCTTCAGACTTGAGATTGATTGATGTGTAGTGAGGTGAGAATTCTTTGATGTACCAGCTGTCTGCTATCCGAATGACTGTAACTTTGTGTCCTTTGGCATGAAGTGCTTCAACCAAGATGTTCATGTTGATCCAGTGACTGCCACCCACGGGAAAGACGAGAACCTTCCCGCTCCGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU68530 lncRNA upstream 14787 15662473 ~ 15662695 (+) True G60213
TU68539 lncRNA upstream 120581 15556519 ~ 15556901 (+) True G60222
TU68538 lncRNA upstream 121649 15555606 ~ 15555833 (+) True G60221
TU68537 lncRNA upstream 122071 15555133 ~ 15555411 (+) True G60220
TU68536 lncRNA upstream 122786 15554354 ~ 15554696 (+) True G60219
TU68603 lncRNA downstream 3188 15697779 ~ 15698147 (+) True G60286
TU68611 lncRNA downstream 53929 15748520 ~ 15749113 (+) True G60293
TU68650 lncRNA downstream 105090 15799681 ~ 15801256 (+) True G60303
CI01000009_15667251_15668333.mRNA mRNA upstream 8032 15667251 ~ 15669450 (+) True CI01000009_15667251_15668333
CI01000009_15637754_15643935.mRNA mRNA upstream 33547 15637650 ~ 15643935 (+) True CI01000009_15637754_15643935
CI01000009_15625341_15626360.mRNA mRNA upstream 51079 15625159 ~ 15626403 (+) True CI01000009_15625341_15626360
CI01000009_15610515_15613753.mRNA mRNA upstream 63729 15610032 ~ 15613753 (+) True CI01000009_15610515_15613753
CI01000009_15415868_15427139.mRNA mRNA upstream 250284 15413174 ~ 15427198 (+) True CI01000009_15415868_15427139
CI01000009_15708273_15712002.mRNA mRNA downstream 11869 15706460 ~ 15712002 (+) False CI01000009_15708273_15712002
CI01000009_15738136_15745816.mRNA mRNA downstream 43481 15738072 ~ 15745866 (+) True CI01000009_15738136_15745816
CI01000009_15770057_15782295.mRNA mRNA downstream 75466 15770057 ~ 15782427 (+) False CI01000009_15770057_15782295
CI01000009_15872202_15973125.mRNA mRNA downstream 177611 15872202 ~ 15973231 (+) True CI01000009_15872202_15973125
CI01000009_15992272_16002225.mRNA mRNA downstream 297681 15992272 ~ 16002225 (+) True CI01000009_15992272_16002225
TU68340 other upstream 301313 15352047 ~ 15376169 (+) False G60028
TU68341 other upstream 319636 15352047 ~ 15357846 (+) True G60028
TU66834 other upstream 721687 14955242 ~ 14955795 (+) True G58694
TU66845 other upstream 818838 14819219 ~ 14837553 (+) True G58702
TU66854 other upstream 903709 14766659 ~ 14773773 (+) False G58711
TU68607 other downstream 13401 15707992 ~ 15712005 (+) True CI01000009_15708273_15712002
TU68648 other downstream 63588 15758179 ~ 15758310 (+) True G60302

Expression Profile