RNA id: TU68611


Basic Information

Item Value
RNA id TU68611
length 594
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G60293
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 15748520 ~ 15749113 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGGGTTTTACATACCGACAAGCGGGACTTCCGGTACCTGGCAGAGCAATCCCTTAAGTTATAAAGTTCACTGAACCGAGAAATAACGCGTCACACATATACCAAATAAACTCATTAGTATTCCGCGCGCACACATGAAAAATAGGCTACAATTTGCGTCCCTAGCAGAAGGGCACCAGTTACTCACAGCACTGGAACTATATATAGCAGAGGAACCAACCCTCTTAAACGGTACAATAAGTACCCACGAGCAGACACCAGCTGCAAAGAAAAGTTAGTCAACAAACAATACGTAAGCCAAACCATAGCCATGCTGAACGAACACCTACCTCCGACACAGAGCAGAGGAGTACCGGTGTCCTTTCATCCTACCCGTCAGATTGTCCGGGCTTACTGCACGTGCGCACATCAATATTACATCATTTTTGTCATGATAACACAAAATTACTGTATTTGCATTATTGTAAGGGTAGGTTTAGTGTTGGGGTAGGTGTAGATGTTAATAAAGCCATAAACCACGTTAATATCACGGTGGAAGCACAATCTGATAGGTAGCATTTTTCGCTGTCAGATTTTGCTACCCACTGTTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68603 lncRNA upstream 50373 15697779 ~ 15698147 (+) True G60286
TU68597 lncRNA upstream 53929 15677482 ~ 15694591 (+) True G60280
TU68530 lncRNA upstream 85825 15662473 ~ 15662695 (+) True G60213
TU68539 lncRNA upstream 191619 15556519 ~ 15556901 (+) True G60222
TU68538 lncRNA upstream 192687 15555606 ~ 15555833 (+) True G60221
TU68650 lncRNA downstream 50568 15799681 ~ 15801256 (+) True G60303
CI01000009_15738136_15745816.mRNA mRNA upstream 2654 15738072 ~ 15745866 (+) True CI01000009_15738136_15745816
CI01000009_15708273_15712002.mRNA mRNA upstream 36518 15706460 ~ 15712002 (+) False CI01000009_15708273_15712002
CI01000009_15680573_15681601.mRNA mRNA upstream 66544 15680573 ~ 15681976 (+) True CI01000009_15680573_15681601
CI01000009_15667251_15668333.mRNA mRNA upstream 79070 15667251 ~ 15669450 (+) True CI01000009_15667251_15668333
CI01000009_15637754_15643935.mRNA mRNA upstream 104585 15637650 ~ 15643935 (+) True CI01000009_15637754_15643935
CI01000009_15770057_15782295.mRNA mRNA downstream 20944 15770057 ~ 15782427 (+) False CI01000009_15770057_15782295
CI01000009_15872202_15973125.mRNA mRNA downstream 123089 15872202 ~ 15973231 (+) True CI01000009_15872202_15973125
CI01000009_15992272_16002225.mRNA mRNA downstream 243159 15992272 ~ 16002225 (+) True CI01000009_15992272_16002225
TU68607 other upstream 36515 15707992 ~ 15712005 (+) True CI01000009_15708273_15712002
TU68340 other upstream 372351 15352047 ~ 15376169 (+) False G60028
TU68341 other upstream 390674 15352047 ~ 15357846 (+) True G60028
TU66834 other upstream 792725 14955242 ~ 14955795 (+) True G58694
TU66845 other upstream 889876 14819219 ~ 14837553 (+) True G58702
TU68648 other downstream 9066 15758179 ~ 15758310 (+) True G60302

Expression Profile