RNA id: TU68720


Basic Information

Item Value
RNA id TU68720
length 749
lncRNA type read_through
GC content 0.32
exon number 3
gene id G60367
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 15781299 ~ 15798959 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGAAATTGGCCATCACTAGATATTGTTAAAAAGTTTTTTTGTTTGTTTTTTTTGGCGCACAAAAAATATTCTCATCGCTTTATAATATTAAGGTAGAACCAATGTACTCACATGAACTAATTTAAATGTTTTTAGTATCTTTATCAATCTTGAGAGAGGACATACCATTGCTGTCTATGTAGGCTGAGCCATCGGATTTCATCAAAAATATCTTAATTCGTGTTCTGAAGATGAACGAAGGTCTTACGGGTGTGGAACGACAAAATTTAATTTTTGGGCGAACTAACCCTTTAAGAATGATATTCAAAACATAGTTGGAGTAGATCAAGTCCATGTGTAATGGCGCCCCCTACTATATAACAGTGAAAACATGGATTGCCAGAAAAATCCGTCAATTGCAGGGAAAGAGTTAATGCACATTCCCGGTCTTTGTATGTTTTAATCAAGAACATAATTTCTTTCTCCACCTCTGAACTTTTCTTTTAGGCTGACATTACAGATCATTAATCCCTCTTCATTACAGAAGGAAAATGGTAGCAAATGATGTTTCATGTTGACTAAGCATAAAAATGACCACAGATTTGTATTAATGTTGGGTTCTGTTGTGAAATGTGGTGCAGTTGAGGAAAACATTTATACAATGGATGTCAAAATTAAATTTACTTTTTTTCCATATACATTCTTTTCTTTTATATAAAGTGCATAATAAATACACATTTAAACGCAAACAAAAAAAAAAAAAAAAAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68833 lncRNA downstream 30305 15750698 ~ 15750994 (-) True G60472
TU68729 lncRNA downstream 34813 15745468 ~ 15746486 (-) True G60376
TU68830 lncRNA downstream 62138 15718562 ~ 15719161 (-) True G60469
TU68828 lncRNA downstream 69152 15708004 ~ 15712147 (-) True G60468
TU68712 lncRNA downstream 118604 15662417 ~ 15662695 (-) True CI01000009_15654061_15662554
TU68840 lncRNA upstream 3928 15802887 ~ 15803791 (-) True G60479
CI01000009_15726357_15736168.mRNA mRNA downstream 45131 15726145 ~ 15736168 (-) True CI01000009_15726357_15736168
CI01000009_15716557_15721525.mRNA mRNA downstream 59703 15716477 ~ 15721596 (-) True CI01000009_15716557_15721525
CI01000009_15693066_15694538.mRNA mRNA downstream 86670 15692994 ~ 15694629 (-) True CI01000009_15693066_15694538
CI01000009_15654061_15662554.mRNA mRNA downstream 118273 15653760 ~ 15663026 (-) False CI01000009_15654061_15662554
CI01000009_15504401_15585060.mRNA mRNA downstream 195470 15504346 ~ 15585829 (-) False CI01000009_15504401_15585060
CI01000009_15802365_15836680.mRNA mRNA upstream 3389 15802348 ~ 15836684 (-) True CI01000009_15802365_15836680
CI01000009_15847186_15853675.mRNA mRNA upstream 47959 15846918 ~ 15853675 (-) True CI01000009_15847186_15853675
CI01000009_15975897_15978506.mRNA mRNA upstream 176771 15975730 ~ 15978506 (-) True CI01000009_15975897_15978506
CI01000009_15981692_15985027.mRNA mRNA upstream 182726 15981685 ~ 15985027 (-) True CI01000009_15981692_15985027
TU68711 other downstream 125330 15646775 ~ 15651888 (-) True G60359
TU68714 other downstream 338252 15376260 ~ 15443047 (-) True G60362
TU68236 other downstream 648796 15132104 ~ 15132503 (-) True G59941
TU68092 other downstream 893835 14862397 ~ 14887464 (-) True G59811
TU67748 other downstream 1743426 14033564 ~ 14037873 (-) True G59490

Expression Profile