RNA id: CI01000010_00388349_00390056.mRNA


Basic Information

Item Value
RNA id CI01000010_00388349_00390056.mRNA
length 551
RNA type mRNA
GC content 0.42
exon number 5
gene id CI01000010_00388349_00390056
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 388349 ~ 390056 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGAACATTGTGCTTTGTATGGCAACTTGTAATAATGCAGAATATGAAATTAATGGAGAGTGTTGCCCAATGTGTGATCCAGGAAATAGAGTTCATAAGCATTGTGATGAGAACACAAGCACTACATGTGGTTCATGCCTTGTGGCGACCTACACTGACATGCCTAATGGATTGACAGAATGTCTGCCATGTTCAGTCTGTGATTCAAGTATTGGGCTGAGAGTAAAGCAAGCATGTACATCGATATCAAATACAGTGTGTGAACCTCTGCCAGGTTATCGCTGTGTTGACTTCCTCTCAAACTGTCCAAAAGCCAAGAAACATTCAACCTGCTCACCTGGACAATACGTCAACCAAACTGGAACAGAATTTAGTGATACAGTGTGTGATCACTGTCCTGCTGGTTCATATTCAAATGGTACACTCTGCAAATTACATACAAAGTGTGAATCTCTTGGCAAAATTAAAGTCAAGGCAGGAACAGAGACATTTGATGCCGAGTGCAGTAATGGGACACCTCGTTTACGGATTGGGATGTCTGTGATTGGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69101 lncRNA upstream 81957 306189 ~ 306392 (+) True G60707
TU69100 lncRNA upstream 84249 303848 ~ 304100 (+) True G60706
TU69099 lncRNA upstream 87097 300570 ~ 301252 (+) True G60705
TU69094 lncRNA upstream 92286 295854 ~ 296063 (+) True G60700
TU69056 lncRNA upstream 93587 294524 ~ 294762 (+) True G60665
TU69058 lncRNA downstream 151762 541818 ~ 551336 (+) False G60667
TU69059 lncRNA downstream 151762 541818 ~ 551336 (+) True G60667
TU69152 lncRNA downstream 177547 567603 ~ 567932 (+) True G60745
TU69087 lncRNA downstream 206768 596824 ~ 597095 (+) True G60693
TU69199 lncRNA downstream 283010 673066 ~ 678107 (+) False G60780
CI01000010_00379332_00382116.mRNA mRNA upstream 6038 379332 ~ 382311 (+) True CI01000010_00379332_00382116
CI01000010_00367694_00371294.mRNA mRNA upstream 16927 366186 ~ 371422 (+) True CI01000010_00367694_00371294
CI01000010_00357915_00361980.mRNA mRNA upstream 26263 357915 ~ 362086 (+) True CI01000010_00357915_00361980
CI01000010_00332125_00333333.mRNA mRNA upstream 54879 332125 ~ 333470 (+) True CI01000010_00332125_00333333
CI01000010_00322969_00326216.mRNA mRNA upstream 61174 322969 ~ 327175 (+) True CI01000010_00322969_00326216
CI01000010_00393562_00396269.mRNA mRNA downstream 2995 393051 ~ 396269 (+) True CI01000010_00393562_00396269
CI01000010_00445263_00455343.mRNA mRNA downstream 55207 445263 ~ 455362 (+) True CI01000010_00445263_00455343
CI01000010_00473858_00478160.mRNA mRNA downstream 83403 473459 ~ 478422 (+) True CI01000010_00473858_00478160
CI01000010_00491341_00497973.mRNA mRNA downstream 101241 491297 ~ 498199 (+) True CI01000010_00491341_00497973
CI01000010_00504866_00514962.mRNA mRNA downstream 114810 504866 ~ 515974 (+) True CI01000010_00504866_00514962
TU69288 other downstream 430968 821024 ~ 838432 (+) True G60857
TU69285 other downstream 475758 865814 ~ 870598 (+) True G60854
TU69273 other downstream 555126 946794 ~ 946871 (+) True G60842
TU70029 other downstream 2804099 3194155 ~ 3199031 (+) True G61462
TU70047 other downstream 2923639 3328458 ~ 3331186 (+) True G61480

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00069844 False 1101 mRNA 0.39 6 NC_007119.7 22355909 ~ 22362868 (+)