RNA id: CI01000010_00504866_00514962.mRNA



Basic Information


Item Value
RNA id CI01000010_00504866_00514962.mRNA
length 1498
RNA type mRNA
GC content 0.39
exon number 3
gene id CI01000010_00504866_00514962
representative True

Chromosome Information


Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 504866 ~ 515974 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGTGCAGGACATTCTCCTATTGGAGGAAGGTGCACTGCTTATTCCCAGACAAGCTGCATCCAGCGTTTCCAATGAATAGAGTACTTGGGTTGGGACCTGGGTGTTTGTTAGAGAATGGCATGATGGGGTTGTTTGATGCTGTCTGCACCTGGCTGGTGTCTTGCTGGGATGTTTCAGCATCTGTGTGGCTGCCCGACATGTTACCGCATTTTATTCCGCTTGAGGACAGTGTAATCTGGTGGTTGCAGTCCTGTAAACTGGATGAAGAGGAAGCACTTAATGAACTATTAGTCTCTCCAGTGGTCCACTTATTATGGGAGCGTGACAACACTTCTCTGTATGCTGTGACCTTGACGTGGTGGAGAACCTTGAGTACCTCTGGAAACTTATCCCAGTCCAAGCTTTTACTTCAAAAGCAGATTCAACACACCAGGGTAATCCCAAGAGGGCAGACAAACCACAAGCTAGTAGCAGCTCTGGAGTAAACATGCATGAATGTCAATAGAGTGGTGCAGTGTTTTTCAATTTATGAGTAAAATAAAGCCTGGGATAAATATAACTTGACAATATTTTGACATTTTGTTCTACAACATAAACGGCACACACACTCCGAACTGTCTAGTTAATTATAAGAAACATTATAATATATATATATATATATATATATATATAGTTTAATCACAAATTGAAAACCCCAATATAAAACCCCATAAGAGTAAGAGACCATGATGATGGACAGAGGCCGGCTAGGATGCCGGGGTTACTTCCCTGACTCTTTTTCGAAGGACATCCTTGGATTTTTTTTTTTTATGACCACAGAGCGTCAGGACCTCCGTTTAACTTCTCATTTGAAGGACGGTCCCCATCACTATCCTGGGCCGTTAGGACCCACACAGACCATAAGGTGAGCACCCCCTTCTGGTCTCAGTAATGCCTCTTCCAGAAGCAACCTAGTTTTTTTCCCAGGAGGTTTCCCATCCAGTACTGACAGGGCTCAACCCTTTTTAGCTTCAGTGGGTGACCAAGACAGAGCTGCACAGTGATAGCTGCTGGCAAATGGACAGATGTATATTTTAATGAATACAATAACTTTGTTTTGTATCATATTGTTTCTTACAATAGTGGTCTTATCATCATTTGTTAATAACAACAACAACAACAACAACAACAACAGTGTTCTGTTTGTCTACTTCTCTCTATGTATATAAACACCTGAACAGATGTCTGACAGGCTATATTTTAATACCCTATTCTCTGCTCATATAACAGTGGCCACAAAAACTACTTGGGACACTTTTGGTCCCATAAGCCACACTTACAATCAATGAATCAATGAATTTCTTTATATCTATTGTTTTGTCACTTGTTTTTTTGTTTTGTTTTTTTTTTCTTAAATTGTGTTTGTATTATTCTCTCTTTAAAAAAAAAATGACACCACTATTGTAAAATATAAAGACTTACATTTTTAAGTGTGACAAAATACTTTTTTTTAGGCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU69101 lncRNA upstream 198474 306189 ~ 306392 (+) True G60707
TU69100 lncRNA upstream 200766 303848 ~ 304100 (+) True G60706
TU69099 lncRNA upstream 203614 300570 ~ 301252 (+) True G60705
TU69094 lncRNA upstream 208803 295854 ~ 296063 (+) True G60700
TU69056 lncRNA upstream 210104 294524 ~ 294762 (+) True G60665
TU69058 lncRNA downstream 25844 541818 ~ 551336 (+) False G60667
TU69059 lncRNA downstream 25844 541818 ~ 551336 (+) True G60667
TU69152 lncRNA downstream 51629 567603 ~ 567932 (+) True G60745
TU69087 lncRNA downstream 80850 596824 ~ 597095 (+) True G60693
TU69199 lncRNA downstream 157092 673066 ~ 678107 (+) False G60780
CI01000010_00491341_00497973.mRNA mRNA upstream 6667 491297 ~ 498199 (+) True CI01000010_00491341_00497973
CI01000010_00473858_00478160.mRNA mRNA upstream 26444 473459 ~ 478422 (+) True CI01000010_00473858_00478160
CI01000010_00445263_00455343.mRNA mRNA upstream 49504 445263 ~ 455362 (+) True CI01000010_00445263_00455343
CI01000010_00393562_00396269.mRNA mRNA upstream 108597 393051 ~ 396269 (+) True CI01000010_00393562_00396269
CI01000010_00388349_00390056.mRNA mRNA upstream 114810 388349 ~ 390056 (+) True CI01000010_00388349_00390056
CI01000010_00529313_00531098.mRNA mRNA downstream 13339 529313 ~ 531228 (+) True CI01000010_00529313_00531098
CI01000010_00588108_00595271.mRNA mRNA downstream 71655 587629 ~ 595462 (+) True CI01000010_00588108_00595271
CI01000010_00746445_00783522.mRNA mRNA downstream 230471 746445 ~ 783522 (+) True CI01000010_00746445_00783522
CI01000010_00797362_00800297.mRNA mRNA downstream 281388 797362 ~ 800301 (+) True CI01000010_00797362_00800297
CI01000010_00808732_00810151.mRNA mRNA downstream 292758 808732 ~ 810331 (+) True CI01000010_00808732_00810151
TU69288 other downstream 305050 821024 ~ 838432 (+) True G60857
TU69285 other downstream 349840 865814 ~ 870598 (+) True G60854
TU69273 other downstream 429208 946794 ~ 946871 (+) True G60842
TU70029 other downstream 2678181 3194155 ~ 3199031 (+) True G61462
TU70047 other downstream 2797721 3328458 ~ 3331186 (+) True G61480

Expression Profile