RNA id: TU70363


Basic Information

Item Value
RNA id TU70363
length 272
lncRNA type sense_over
GC content 0.36
exon number 1
gene id CI01000010_03017924_03021246
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 3017216 ~ 3022870 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCAACAATATCTAGTAATGGGTGATTTCGAAACACTGCTTCATGAATCTTTTGTTTCGAATCAGTGGTTAGGAGCATGAATCAAACTGCCAAAATCATGTGAACCATTGAAATTTCGAAACACTTATGACGTAACAAAGTCTCGTTTACTGAAACGACCTCTGATTCGAAACAAAAGATTCGTAAAGTTTCGAAGCTTCATGAAGCAGTGTTTTTGAGATCGCCCATCACTAGATATTGTTGAATAAAGTCGTTATTTTGTTTATTTGGCG

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70356 lncRNA upstream 14384 3007089 ~ 3007312 (+) True G61779
TU70351 lncRNA upstream 20212 3001269 ~ 3001484 (+) True G61774
TU70346 lncRNA upstream 26556 2994902 ~ 2995140 (+) True G61769
TU70340 lncRNA upstream 35552 2985762 ~ 2986144 (+) True G61763
TU70339 lncRNA upstream 36094 2985383 ~ 2985602 (+) True G61762
TU70361 lncRNA downstream 1998 3023965 ~ 3025452 (+) True G61784
TU70011 lncRNA downstream 9790 3031757 ~ 3042482 (+) True G61444
TU69976 lncRNA downstream 33207 3055174 ~ 3087016 (+) True G61409
TU70409 lncRNA downstream 179672 3201639 ~ 3232879 (+) False G61826
TU70410 lncRNA downstream 179672 3201639 ~ 3202445 (+) True G61826
CI01000010_02847074_02911612.mRNA mRNA upstream 110084 2847074 ~ 2911612 (+) True CI01000010_02847074_02911612
CI01000010_02821021_02827050.mRNA mRNA upstream 194479 2821021 ~ 2827217 (+) True CI01000010_02821021_02827050
CI01000010_02805903_02806462.mRNA mRNA upstream 214853 2805662 ~ 2806843 (+) True CI01000010_02805903_02806462
CI01000010_02734548_02755209.mRNA mRNA upstream 265905 2734548 ~ 2755791 (+) True CI01000010_02734548_02755209
CI01000010_02726989_02731906.mRNA mRNA upstream 289335 2726552 ~ 2732361 (+) True CI01000010_02726989_02731906
CI01000010_03116123_03125761.mRNA mRNA downstream 94156 3116123 ~ 3126609 (+) True CI01000010_03116123_03125761
CI01000010_03142808_03164874.mRNA mRNA downstream 118677 3140644 ~ 3165257 (+) True CI01000010_03142808_03164874
CI01000010_03172010_03192359.mRNA mRNA downstream 150043 3172010 ~ 3192795 (+) True CI01000010_03172010_03192359
CI01000010_03197380_03199958.mRNA mRNA downstream 175413 3197380 ~ 3200044 (+) False CI01000010_03197380_03199958
CI01000010_03236941_03246548.mRNA mRNA downstream 214974 3236941 ~ 3247594 (+) True CI01000010_03236941_03246548
TU69273 other upstream 2074152 946794 ~ 946871 (+) True G60842
TU69285 other upstream 2138182 865814 ~ 870598 (+) True G60854
TU69288 other upstream 2183264 821024 ~ 838432 (+) True G60857
TU70029 other downstream 172188 3194155 ~ 3199031 (+) True G61462
TU70047 other downstream 291728 3328458 ~ 3331186 (+) True G61480
TU71560 other downstream 868128 3890095 ~ 3893793 (+) True G62838
TU71580 other downstream 915790 3937757 ~ 3939945 (+) True G62856
TU71738 other downstream 1426205 4448172 ~ 4449327 (+) True G62983

Expression Profile