RNA id: TU73187


Basic Information

Item Value
RNA id TU73187
length 754
lncRNA type sense_over
GC content 0.39
exon number 3
gene id CI01000010_04433165_04436747
representative False

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 4432907 ~ 4436929 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGACATAATTTTCATTTTTGGGTGAACTATCCCTTTAACATTAGTTTATGCAACTGGCCCCAGTGGTGTTGTGTTGAAATTGCAGATTTAAAGAAATCAGTTACTAGAGGTCGCTGTTCATTGAATGTTTATGCAAGTATGTACCCGGCGCTCGTAGCTATATATATTCTTATTAATCTTATAGTGGGGGTCGTTTGAGTCAAAAAGGTTGAGAATTACTGATCTAGGTTACTGATTTCGGCACAACACCTGTACTAATTCTACAACTGTGCTGAAAACATCTATTGAAAAATTACAGATATCATGTGCATATTTTATTTCAGATTTGATTTCACATGTCCAAGTGTTGATGATTCAATTTTACCATTTCCTTTCACAGACCAATTTGTCCAAATATAACAATGTGACTGTTTTCTTGGCACCCGGAGTGATGGAGGTGTTGGGTAGAAAACTGGAGAAGGAGTTACCAGATGAGGCTCGTGTGATTGCCTGTCGCTTCCCATTTCCTGACTGGACTCCTACAGCCACTGAGGGTGAAGGACTAGACCAGGCCTGGGCATATGATATGAATGCCATACGGAAGCTTTCAACACATGCTACCATGAAATGAGGAGAAAAGCACCTTTCCTTGTGTCAAAAAGCTTTGTTTTTTGTTTGAGCACCACCTGAAAGGTGGGTTTGATGACAAATGGCATGTGTGTGTTGTAAAATGCTAAACTAAACTGTGAAATAAAGAGCCAACATTACCTTTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73295 lncRNA downstream 149822 4282756 ~ 4283085 (-) True G64382
TU73144 lncRNA downstream 196491 4231193 ~ 4236416 (-) True G64237
TU73245 lncRNA downstream 211979 4217753 ~ 4220928 (-) True G64332
TU73071 lncRNA downstream 373755 4057217 ~ 4059152 (-) True G64169
TU73070 lncRNA downstream 377575 4054537 ~ 4055332 (-) True G64168
TU73194 lncRNA upstream 897 4437197 ~ 4437274 (-) True G64281
TU73193 lncRNA upstream 70252 4504393 ~ 4521646 (-) True G64280
TU73327 lncRNA upstream 143603 4577744 ~ 4578094 (-) True G64411
TU73336 lncRNA upstream 180024 4614165 ~ 4615086 (-) True G64418
TU73341 lncRNA upstream 208748 4642889 ~ 4644040 (-) True G64421
CI01000010_04426092_04431357.mRNA mRNA downstream 1520 4425424 ~ 4431387 (-) True CI01000010_04426092_04431357
CI01000010_04383043_04410672.mRNA mRNA downstream 20575 4382871 ~ 4412332 (-) True CI01000010_04383043_04410672
CI01000010_04374856_04376532.mRNA mRNA downstream 55961 4374508 ~ 4376946 (-) True CI01000010_04374856_04376532
CI01000010_04356379_04367982.mRNA mRNA downstream 64657 4356337 ~ 4368250 (-) True CI01000010_04356379_04367982
CI01000010_04311215_04316218.mRNA mRNA downstream 116236 4310734 ~ 4316671 (-) True CI01000010_04311215_04316218
CI01000010_04445984_04469908.mRNA mRNA upstream 11419 4445560 ~ 4470289 (-) True CI01000010_04445984_04469908
CI01000010_04496312_04498116.mRNA mRNA upstream 61710 4495851 ~ 4498191 (-) True CI01000010_04496312_04498116
CI01000010_04559649_04573405.mRNA mRNA upstream 125479 4559620 ~ 4573979 (-) True CI01000010_04559649_04573405
CI01000010_04590937_04594873.mRNA mRNA upstream 156035 4590176 ~ 4595855 (-) True CI01000010_04590937_04594873
CI01000010_04597295_04608873.mRNA mRNA upstream 163135 4597276 ~ 4608985 (-) True CI01000010_04597295_04608873
TU73142 other downstream 196491 4229950 ~ 4236416 (-) False G64237
TU72970 other downstream 532996 3899741 ~ 3899911 (-) False G64080
TU72971 other downstream 532996 3899741 ~ 3899911 (-) True G64080
TU71288 other downstream 901255 3531516 ~ 3531652 (-) True G62599
TU70569 other downstream 2887856 1424425 ~ 1545051 (-) True G61965
TU73132 other upstream 178355 4613485 ~ 4613556 (-) True G64230
TU73495 other upstream 615014 5049155 ~ 5242926 (-) True G64564
TU73846 other upstream 1482116 5916257 ~ 5917011 (-) True G64877
TU73887 other upstream 1659548 6093689 ~ 6096480 (-) False G64918
TU74496 other upstream 3229550 7663691 ~ 7672343 (-) False G65453

Expression Profile