RNA id: TU69473


Basic Information

Item Value
RNA id TU69473
length 315
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G61016
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 397070 ~ 397384 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

NCGTGACTGTTCTTGAATGGCCCAGCCAGAGCCCTGACTTAAACCCAATTGAGCATCTCTGGAGAGACCTAAAAATGGCTGTCCACCAATGTTTACCATCCAACCTGACAGAACTGGAGAGGATCTGCAAGGAGGAATGGCAGAGGATCCCCAAATCCAGGTGTGAAAAACTTGTTGCATCTTTCCCAAAAAGACTCATGGCTGTATTAGATCAAAAGGGTGCTTCCACTAAATACTGAGCAAAGGGTCTGAATACTTAGGACCATGTGATATTTCAGTTTTTCTTTTTTAATAAATCTGCAAAAATGTCAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69470 lncRNA downstream 10719 385060 ~ 386351 (-) True G61013
TU69469 lncRNA downstream 11326 384872 ~ 385744 (-) False G61013
TU69401 lncRNA downstream 13089 382064 ~ 383981 (-) True G60953
TU69406 lncRNA downstream 30045 365887 ~ 367025 (-) True G60958
TU69465 lncRNA downstream 74867 320408 ~ 322203 (-) False G61011
TU69400 lncRNA upstream 41811 439195 ~ 439916 (-) True G60952
TU69391 lncRNA upstream 88998 486382 ~ 502688 (-) True G60943
TU69495 lncRNA upstream 167224 564608 ~ 564828 (-) True G61035
TU69520 lncRNA upstream 181285 578669 ~ 578948 (-) True G61050
TU69521 lncRNA upstream 181660 579044 ~ 579766 (-) True G61051
CI01000010_00335493_00356496.mRNA mRNA downstream 40574 335440 ~ 356496 (-) True CI01000010_00335493_00356496
CI01000010_00327845_00329442.mRNA mRNA downstream 67628 327227 ~ 329442 (-) True CI01000010_00327845_00329442
CI01000010_00154875_00293942.mRNA mRNA downstream 103128 154875 ~ 293942 (-) True CI01000010_00154875_00293942
CI01000010_00421834_00427873.mRNA mRNA upstream 23853 421237 ~ 428143 (-) True CI01000010_00421834_00427873
CI01000010_00517865_00522058.mRNA mRNA upstream 120128 517512 ~ 522058 (-) True CI01000010_00517865_00522058
CI01000010_00524503_00527976.mRNA mRNA upstream 127015 524399 ~ 527976 (-) True CI01000010_00524503_00527976
CI01000010_00532752_00544586.mRNA mRNA upstream 135233 532617 ~ 544586 (-) True CI01000010_00532752_00544586
CI01000010_00553512_00562038.mRNA mRNA upstream 156029 553413 ~ 562038 (-) True CI01000010_00553512_00562038
TU69515 other upstream 175369 572753 ~ 575511 (-) True G61045
TU70485 other upstream 847085 1244469 ~ 1246018 (-) False G61888
TU70488 other upstream 847085 1244469 ~ 1246018 (-) False G61888
TU70569 other upstream 1027041 1424425 ~ 1545051 (-) True G61965
TU71288 other upstream 3132286 3531516 ~ 3531652 (-) True G62599

Expression Profile