RNA id: TU69152


Basic Information

Item Value
RNA id TU69152
length 330
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G60745
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 567603 ~ 567932 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATACAGGTGCTGGTCATATAATTAGAATATCATCAAAAAGTTGATTTATTTCACTAATTCCATTCAAAAAGTGAAACTTGTATATTATATTCATTCATTACACACAGACTGAAATATTTCAAATGTTTATTTCTTTTAATTTTGATGATTATAACTGACAACTAAGGAAAATCCCAAATTCAGTATCTCAGAAAATTAGAATATTGTGAAAAGGTTCAATATTGAAGACACCTGGTGCCACACTCTAATCAGCTAATTAACTCAAAACACCTGCAAAGGCCTTTAAATGGTCTCTCAGTCTAGTTCTGTAGGCTACACAATCATGGGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69058 lncRNA upstream 16267 541818 ~ 551336 (+) False G60667
TU69059 lncRNA upstream 16267 541818 ~ 551336 (+) True G60667
TU69101 lncRNA upstream 261211 306189 ~ 306392 (+) True G60707
TU69100 lncRNA upstream 263503 303848 ~ 304100 (+) True G60706
TU69099 lncRNA upstream 266351 300570 ~ 301252 (+) True G60705
TU69087 lncRNA downstream 28892 596824 ~ 597095 (+) True G60693
TU69199 lncRNA downstream 105134 673066 ~ 678107 (+) False G60780
TU69196 lncRNA downstream 107353 675285 ~ 678107 (+) False G60780
TU69202 lncRNA downstream 107353 675285 ~ 678107 (+) True G60780
TU69226 lncRNA downstream 159905 727837 ~ 736009 (+) True G60801
CI01000010_00529313_00531098.mRNA mRNA upstream 36375 529313 ~ 531228 (+) True CI01000010_00529313_00531098
CI01000010_00504866_00514962.mRNA mRNA upstream 51629 504866 ~ 515974 (+) True CI01000010_00504866_00514962
CI01000010_00491341_00497973.mRNA mRNA upstream 69404 491297 ~ 498199 (+) True CI01000010_00491341_00497973
CI01000010_00473858_00478160.mRNA mRNA upstream 89181 473459 ~ 478422 (+) True CI01000010_00473858_00478160
CI01000010_00445263_00455343.mRNA mRNA upstream 112241 445263 ~ 455362 (+) True CI01000010_00445263_00455343
CI01000010_00588108_00595271.mRNA mRNA downstream 19697 587629 ~ 595462 (+) True CI01000010_00588108_00595271
CI01000010_00746445_00783522.mRNA mRNA downstream 178513 746445 ~ 783522 (+) True CI01000010_00746445_00783522
CI01000010_00797362_00800297.mRNA mRNA downstream 229430 797362 ~ 800301 (+) True CI01000010_00797362_00800297
CI01000010_00808732_00810151.mRNA mRNA downstream 240800 808732 ~ 810331 (+) True CI01000010_00808732_00810151
CI01000010_00826648_00831638.mRNA mRNA downstream 258716 826648 ~ 832705 (+) False CI01000010_00826648_00831638
TU69288 other downstream 253092 821024 ~ 838432 (+) True G60857
TU69285 other downstream 297882 865814 ~ 870598 (+) True G60854
TU69273 other downstream 377250 946794 ~ 946871 (+) True G60842
TU70029 other downstream 2626223 3194155 ~ 3199031 (+) True G61462
TU70047 other downstream 2745763 3328458 ~ 3331186 (+) True G61480

Expression Profile