RNA id: TU69520


Basic Information

Item Value
RNA id TU69520
length 280
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G61050
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 578669 ~ 578948 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGTGGCAAACTCAAGCTGTGGAGAAGATTTTGGTCAAGTGGAGTTTAAATGTTACAGGCGAAAGAACTGAGAGGCATCAGTGCATTTGAAATAGGTTGCGTTTTTGTTTGGTAGTCTTCAGGTTTTCTTATTAATTTATTACATTGTTATTTTCTTTTTTTAAAGGAAGCACTTTGCAGTTATACAGTGCATAAAAAATATATACATGTTTTTTTAATCTTTAAATCATGCAATTAAAGGATTAGTTTACTTTCAAATGAAAATTAGCCCAAGCTTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69495 lncRNA downstream 13841 564608 ~ 564828 (-) True G61035
TU69391 lncRNA downstream 75981 486382 ~ 502688 (-) True G60943
TU69400 lncRNA downstream 138753 439195 ~ 439916 (-) True G60952
TU69473 lncRNA downstream 181285 397070 ~ 397384 (-) True G61016
TU69470 lncRNA downstream 192318 385060 ~ 386351 (-) True G61013
TU69521 lncRNA upstream 96 579044 ~ 579766 (-) True G61051
TU69525 lncRNA upstream 5868 584816 ~ 585087 (-) True G61055
TU69513 lncRNA upstream 17178 596126 ~ 596685 (-) True G61043
TU69549 lncRNA upstream 201859 780807 ~ 783522 (-) True G61075
TU69596 lncRNA upstream 210247 789195 ~ 789490 (-) True G61098
CI01000010_00553512_00562038.mRNA mRNA downstream 16631 553413 ~ 562038 (-) True CI01000010_00553512_00562038
CI01000010_00532752_00544586.mRNA mRNA downstream 34083 532617 ~ 544586 (-) True CI01000010_00532752_00544586
CI01000010_00524503_00527976.mRNA mRNA downstream 50693 524399 ~ 527976 (-) True CI01000010_00524503_00527976
CI01000010_00517865_00522058.mRNA mRNA downstream 56611 517512 ~ 522058 (-) True CI01000010_00517865_00522058
CI01000010_00421834_00427873.mRNA mRNA downstream 150526 421237 ~ 428143 (-) True CI01000010_00421834_00427873
CI01000010_00601570_00615159.mRNA mRNA upstream 22622 601570 ~ 615159 (-) True CI01000010_00601570_00615159
CI01000010_00653231_00678240.mRNA mRNA upstream 74237 653185 ~ 679693 (-) True CI01000010_00653231_00678240
CI01000010_00691767_00731442.mRNA mRNA upstream 112819 691767 ~ 731442 (-) True CI01000010_00691767_00731442
CI01000010_00810923_00813645.mRNA mRNA upstream 231499 810447 ~ 813870 (-) True CI01000010_00810923_00813645
CI01000010_00861290_00870510.mRNA mRNA upstream 281532 860480 ~ 871146 (-) True CI01000010_00861290_00870510
TU69515 other downstream 3158 572753 ~ 575511 (-) True G61045
TU70485 other upstream 665521 1244469 ~ 1246018 (-) False G61888
TU70488 other upstream 665521 1244469 ~ 1246018 (-) False G61888
TU70569 other upstream 845477 1424425 ~ 1545051 (-) True G61965
TU71288 other upstream 2950722 3531516 ~ 3531652 (-) True G62599
TU72970 other upstream 3311121 3899741 ~ 3899911 (-) False G64080

Expression Profile