RNA id: TU71342


Basic Information

Item Value
RNA id TU71342
length 235
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G62650
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 3438346 ~ 3438580 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAGAAATGACACTTTGCTACAATGTAAAGTAGTGAGTGTACAGCTTGTATAACAGTGTAAATTTGCTGTCCCCTCAAAATAACTTAACACACAGCCATTAATGTCTAAACCGCTGGCCACAAAAGTGAGTACACCCCTAAGTAAAAATGTCCAAATTGGGCCCAATTAGCCATTTTCTCTTCCCGGTATCATGTGACTCGTTAGTGTTACAAGGTCTCAGTTGTGAATGGGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71340 lncRNA downstream 1418 3436698 ~ 3436928 (-) True G62648
TU71284 lncRNA downstream 2238 3391336 ~ 3436108 (-) True G62596
TU71328 lncRNA downstream 35528 3402307 ~ 3402818 (-) True G62636
TU71306 lncRNA downstream 50108 3367235 ~ 3388238 (-) False G62616
TU71305 lncRNA downstream 65559 3372305 ~ 3372787 (-) True G62616
TU71377 lncRNA upstream 160246 3598826 ~ 3599035 (-) True G62682
TU71395 lncRNA upstream 192958 3631538 ~ 3632004 (-) True G62699
TU73016 lncRNA upstream 481090 3919670 ~ 3919890 (-) True G64119
TU73023 lncRNA upstream 491036 3929616 ~ 3931626 (-) True G64126
TU72977 lncRNA upstream 518779 3957359 ~ 3958683 (-) False G64084
CI01000010_03308058_03308511.mRNA mRNA downstream 127999 3307482 ~ 3310347 (-) True CI01000010_03308058_03308511
CI01000010_03204475_03207149.mRNA mRNA downstream 231197 3204435 ~ 3207149 (-) True CI01000010_03204475_03207149
CI01000010_03109809_03114298.mRNA mRNA downstream 324048 3109803 ~ 3114298 (-) True CI01000010_03109809_03114298
CI01000010_03101723_03103968.mRNA mRNA downstream 334188 3100588 ~ 3104158 (-) True CI01000010_03101723_03103968
CI01000010_03033615_03059357.mRNA mRNA downstream 378989 3032384 ~ 3059357 (-) True CI01000010_03033615_03059357
CI01000010_03494576_03500309.mRNA mRNA upstream 55726 3494306 ~ 3500309 (-) True CI01000010_03494576_03500309
CI01000010_03517080_03524389.mRNA mRNA upstream 78280 3516860 ~ 3524389 (-) True CI01000010_03517080_03524389
CI01000010_03527436_03530341.mRNA mRNA upstream 88828 3527408 ~ 3530341 (-) False CI01000010_03527436_03530341
CI01000010_03544215_03547481.mRNA mRNA upstream 104940 3543520 ~ 3547481 (-) True CI01000010_03544215_03547481
CI01000010_03557384_03566580.mRNA mRNA upstream 118352 3556932 ~ 3567714 (-) True CI01000010_03557384_03566580
TU70569 other downstream 1893295 1424425 ~ 1545051 (-) True G61965
TU70485 other downstream 2192328 1244469 ~ 1246018 (-) False G61888
TU70488 other downstream 2192328 1244469 ~ 1246018 (-) False G61888
TU69515 other downstream 2862835 572753 ~ 575511 (-) True G61045
TU71288 other upstream 91090 3531516 ~ 3531652 (-) True G62599
TU72970 other upstream 451489 3899741 ~ 3899911 (-) False G64080
TU72971 other upstream 451489 3899741 ~ 3899911 (-) True G64080
TU73142 other upstream 791370 4229950 ~ 4236416 (-) False G64237
TU73132 other upstream 1173916 4613485 ~ 4613556 (-) True G64230

Expression Profile