RNA id: TU70434


Basic Information

Item Value
RNA id TU70434
length 224
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G61847
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 3439611 ~ 3439834 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCGATCGCAGCATATGTGCCACTTAAATGGTAGGCGGAGATGATCTGCCTCATTCAAATTGGTCCATCCTACCTTGATTAGGACCCAGTGAATAATAGATGTTTGTTGTAAACTGGGTTAAAATGTTGATAGCTGGTGAATGTAACCTAGTTTAGAGCAGTGTTCTCTCTCGCACCCATTCTTTCTATACTCCAGTGGTTAAAACAGTTTTATTAATGTTCTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70041 lncRNA upstream 91815 3333636 ~ 3347796 (+) True CI01000010_03320340_03346243
TU70420 lncRNA upstream 166606 3272794 ~ 3273005 (+) True G61835
TU70409 lncRNA upstream 206732 3201639 ~ 3232879 (+) False G61826
TU70410 lncRNA upstream 237166 3201639 ~ 3202445 (+) True G61826
TU69976 lncRNA upstream 352595 3055174 ~ 3087016 (+) True G61409
TU70447 lncRNA downstream 131084 3570918 ~ 3571148 (+) True G61860
TU70473 lncRNA downstream 245602 3685436 ~ 3685759 (+) True G61879
TU71441 lncRNA downstream 264155 3703989 ~ 3704201 (+) True G62738
TU71462 lncRNA downstream 317366 3757200 ~ 3757801 (+) True G62748
TU71468 lncRNA downstream 341799 3781633 ~ 3786254 (+) True CI01000010_03781620_03785840
CI01000010_03365131_03431309.mRNA mRNA upstream 8302 3365131 ~ 3431309 (+) True CI01000010_03365131_03431309
CI01000010_03320340_03346243.mRNA mRNA upstream 92807 3319557 ~ 3346804 (+) False CI01000010_03320340_03346243
CI01000010_03283444_03291108.mRNA mRNA upstream 147983 3283444 ~ 3291628 (+) True CI01000010_03283444_03291108
CI01000010_03273559_03278060.mRNA mRNA upstream 161494 3273333 ~ 3278117 (+) True CI01000010_03273559_03278060
CI01000010_03266931_03270717.mRNA mRNA upstream 168494 3265597 ~ 3271117 (+) True CI01000010_03266931_03270717
CI01000010_03455472_03466444.mRNA mRNA downstream 15346 3455180 ~ 3466771 (+) True CI01000010_03455472_03466444
CI01000010_03483057_03492616.mRNA mRNA downstream 43223 3483057 ~ 3492894 (+) True CI01000010_03483057_03492616
CI01000010_03504678_03509756.mRNA mRNA downstream 64844 3504678 ~ 3509756 (+) True CI01000010_03504678_03509756
CI01000010_03532494_03537374.mRNA mRNA downstream 92660 3532494 ~ 3538010 (+) True CI01000010_03532494_03537374
CI01000010_03549798_03555625.mRNA mRNA downstream 109964 3549798 ~ 3555809 (+) True CI01000010_03549798_03555625
TU70047 other upstream 108425 3328458 ~ 3331186 (+) True G61480
TU70029 other upstream 239703 3194155 ~ 3199031 (+) True G61462
TU69273 other upstream 2492067 946794 ~ 946871 (+) True G60842
TU69285 other upstream 2556097 865814 ~ 870598 (+) True G60854
TU69288 other upstream 2601179 821024 ~ 838432 (+) True G60857
TU71560 other downstream 450261 3890095 ~ 3893793 (+) True G62838
TU71580 other downstream 497923 3937757 ~ 3939945 (+) True G62856
TU71738 other downstream 1008338 4448172 ~ 4449327 (+) True G62983
TU71841 other downstream 1201007 4640841 ~ 4653993 (+) False CI01000010_04640858_04683752
TU71842 other downstream 1201007 4640841 ~ 4651767 (+) True CI01000010_04640858_04683752

Expression Profile