RNA id: TU71462


Basic Information

Item Value
RNA id TU71462
length 602
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G62748
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 3757200 ~ 3757801 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAATCAAGACACTAAATATGATGCAAAATTACAAAGCCATTCTCACAAGGTTTGTAAATTCAAAAAGTGCTAATTTTATCAAACTGTTCACATGCATAAAAAAATAATAATTTTTACTTCAAGGTTCAGCAACAGATACTCTGAGTTGAGGTAGTTCCCTGTATATTTTCCACATTTTTTGCTCTTGTACTTCAACTTTTATCTAAGATGCTGTGTAGATGTAATTGTCTACATTCTTGTAATGAATTACACTGATATTTGTATTGATATGTATTGTACTGTATGTACAGCAGAGTTGCATCAAGAAGCTCCCCTCCCTTAGTCGAGTTGATTCTTAATGCAGTATATGGACGTTGAGGTTGATCTCTGCTTAGCCCTCACTCTCAACTGCCAAGCAGAATAAAGGTCTCCTGACAGAGTCATTATAGGCTATGACATTAGCACTCAAGGAACTCAAATCAGAACTAACAGAAAAAGAGTTTCCTTTGTGGTATTTTAGCAATAGTTTTGTTACTTCTGACTCTCTAGTCAAGTTACAACCGGTAACTGAAAGATCGTAAAGCACTTTTTGATAGAACTGAAATAGAATGAAACACAAAACC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71441 lncRNA upstream 52999 3703989 ~ 3704201 (+) True G62738
TU70473 lncRNA upstream 71441 3685436 ~ 3685759 (+) True G61879
TU70447 lncRNA upstream 186052 3570918 ~ 3571148 (+) True G61860
TU70434 lncRNA upstream 317366 3439611 ~ 3439834 (+) True G61847
TU70041 lncRNA upstream 409404 3333636 ~ 3347796 (+) True CI01000010_03320340_03346243
TU71468 lncRNA downstream 23832 3781633 ~ 3786254 (+) True CI01000010_03781620_03785840
TU71510 lncRNA downstream 58230 3816031 ~ 3816505 (+) True G62791
TU71507 lncRNA downstream 60855 3818656 ~ 3846441 (+) True G62788
TU71601 lncRNA downstream 205947 3963748 ~ 3964163 (+) True G62868
TU71602 lncRNA downstream 206852 3964653 ~ 3965140 (+) True G62869
CI01000010_03721429_03756576.mRNA mRNA upstream 624 3721429 ~ 3756576 (+) True CI01000010_03721429_03756576
CI01000010_03684496_03695503.mRNA mRNA upstream 61661 3684496 ~ 3695539 (+) True CI01000010_03684496_03695503
CI01000010_03637767_03674123.mRNA mRNA upstream 83033 3637767 ~ 3674167 (+) True CI01000010_03637767_03674123
CI01000010_03625058_03633146.mRNA mRNA upstream 124000 3625025 ~ 3633200 (+) True CI01000010_03625058_03633146
CI01000010_03591507_03597612.mRNA mRNA upstream 159003 3591507 ~ 3598197 (+) True CI01000010_03591507_03597612
CI01000010_03761210_03764319.mRNA mRNA downstream 3409 3761210 ~ 3764877 (+) True CI01000010_03761210_03764319
CI01000010_03764993_03769503.mRNA mRNA downstream 7192 3764993 ~ 3769503 (+) True CI01000010_03764993_03769503
CI01000010_03770735_03776382.mRNA mRNA downstream 12934 3770735 ~ 3776567 (+) True CI01000010_03770735_03776382
CI01000010_03778292_03781230.mRNA mRNA downstream 20491 3778292 ~ 3781440 (+) True CI01000010_03778292_03781230
CI01000010_03781620_03785840.mRNA mRNA downstream 23819 3781620 ~ 3785983 (+) False CI01000010_03781620_03785840
TU70047 other upstream 426014 3328458 ~ 3331186 (+) True G61480
TU70029 other upstream 557292 3194155 ~ 3199031 (+) True G61462
TU69273 other upstream 2809656 946794 ~ 946871 (+) True G60842
TU69285 other upstream 2873686 865814 ~ 870598 (+) True G60854
TU69288 other upstream 2918768 821024 ~ 838432 (+) True G60857
TU71560 other downstream 132294 3890095 ~ 3893793 (+) True G62838
TU71580 other downstream 179956 3937757 ~ 3939945 (+) True G62856
TU71738 other downstream 690371 4448172 ~ 4449327 (+) True G62983
TU71841 other downstream 883040 4640841 ~ 4653993 (+) False CI01000010_04640858_04683752
TU71842 other downstream 883040 4640841 ~ 4651767 (+) True CI01000010_04640858_04683752

Expression Profile