RNA id: TU71510


Basic Information

Item Value
RNA id TU71510
length 454
lncRNA type intronic
GC content 0.31
exon number 2
gene id G62791
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 3816031 ~ 3816505 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCAATTCTAAGGAAATAAAAGTTTTTTGCAATTCTGAGAAGTCTTTTTTCCCCTCACAGTTGCACATTATAACATGCAATTGCAAGTTTTTTATCGCACAATTCTGACTTTATATTATGCAATTCTGACTTTATATTTTGCAATTCTGACTTTATAACCTGCAATTCTGACTATAACTCGCAATTCTGACTTTATAACTTGCAATTCTGACTTTATATTACGCAATTATGACTTTATAACTCACAATTCTGACTTTACATCCTGCAATTCTGACTATAACTCGCAATTCTGACTTTATAAAATTTGCAATTCTGACTTTATATTAAGCAATTCTGACTTTATATCCTGCAATTCTGACTTTATAACTCGCAATTCTGACTTTATATTACGCAATTCTGACTTTATAACTCACAATTCTGACTTTATATCTCGCAATTCTGACTTTATATCTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71468 lncRNA upstream 29777 3781633 ~ 3786254 (+) True CI01000010_03781620_03785840
TU71462 lncRNA upstream 58230 3757200 ~ 3757801 (+) True G62748
TU71441 lncRNA upstream 111830 3703989 ~ 3704201 (+) True G62738
TU70473 lncRNA upstream 130272 3685436 ~ 3685759 (+) True G61879
TU70447 lncRNA upstream 244883 3570918 ~ 3571148 (+) True G61860
TU71507 lncRNA downstream 2151 3818656 ~ 3846441 (+) True G62788
TU71601 lncRNA downstream 147243 3963748 ~ 3964163 (+) True G62868
TU71602 lncRNA downstream 148148 3964653 ~ 3965140 (+) True G62869
TU71604 lncRNA downstream 150084 3966589 ~ 3969431 (+) False G62871
TU71607 lncRNA downstream 150084 3966589 ~ 3967416 (+) False G62871
CI01000010_03781620_03785840.mRNA mRNA upstream 30048 3781620 ~ 3785983 (+) False CI01000010_03781620_03785840
CI01000010_03778292_03781230.mRNA mRNA upstream 34591 3778292 ~ 3781440 (+) True CI01000010_03778292_03781230
CI01000010_03770735_03776382.mRNA mRNA upstream 39464 3770735 ~ 3776567 (+) True CI01000010_03770735_03776382
CI01000010_03764993_03769503.mRNA mRNA upstream 46528 3764993 ~ 3769503 (+) True CI01000010_03764993_03769503
CI01000010_03761210_03764319.mRNA mRNA upstream 51154 3761210 ~ 3764877 (+) True CI01000010_03761210_03764319
CI01000010_03882122_03883663.mRNA mRNA downstream 65617 3882122 ~ 3883762 (+) True CI01000010_03882122_03883663
CI01000010_03902240_03911029.mRNA mRNA downstream 85601 3902106 ~ 3911455 (+) True CI01000010_03902240_03911029
CI01000010_03915860_03918633.mRNA mRNA downstream 99355 3915860 ~ 3919137 (+) True CI01000010_03915860_03918633
CI01000010_03920171_03935066.mRNA mRNA downstream 103666 3920171 ~ 3935859 (+) True CI01000010_03920171_03935066
CI01000010_03952874_03957173.mRNA mRNA downstream 136369 3952874 ~ 3957244 (+) True CI01000010_03952874_03957173
TU70047 other upstream 484845 3328458 ~ 3331186 (+) True G61480
TU70029 other upstream 616123 3194155 ~ 3199031 (+) True G61462
TU69273 other upstream 2868487 946794 ~ 946871 (+) True G60842
TU69285 other upstream 2932517 865814 ~ 870598 (+) True G60854
TU69288 other upstream 2977599 821024 ~ 838432 (+) True G60857
TU71560 other downstream 73590 3890095 ~ 3893793 (+) True G62838
TU71580 other downstream 121252 3937757 ~ 3939945 (+) True G62856
TU71738 other downstream 631667 4448172 ~ 4449327 (+) True G62983
TU71841 other downstream 824336 4640841 ~ 4653993 (+) False CI01000010_04640858_04683752
TU71842 other downstream 824336 4640841 ~ 4651767 (+) True CI01000010_04640858_04683752

Expression Profile