RNA id: TU73023


Basic Information

Item Value
RNA id TU73023
length 1424
lncRNA type antisense_over
GC content 0.37
exon number 4
gene id G64126
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 3929616 ~ 3931626 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTTAGTTGGACGTTCGTCTAACATTTTTTAAATGTTGCTTTTTGTTTCAGAATGTTCAGAGAATTTTCAAAAGTAACATTCCCATAAACTTTGAAGAATGCTAAAATTATTTGCATAACCAAGAAAAAACATTTTTAAAACATTTAAAAAAAACAGCGATTTAAATGTTCATTCAGAAATAACGTTTTCATAACTCATTGGGAACGTTAGCAAAACGTTCTTAGTACATGTTAGCTGGAAACCCGGTCTAAAGGGCATTGTGTGTCAGTATTAGCTATTACAGTAGTGAATAGAGAGGTGCAGTGCCTGGTTTGAGATGTGCAAATGGAATCTCGCCCGTGAGCAGCTCCCATAAGCAGAGGGCATAGCTGAACATGTCTGCTTTCACCGTGTAGCGTGTACATTGGGTAAACACCTCTGGGGCCATCCATCGCAGGTTCCCTGGTTGTTTAGTCATATTGTCCTCATCCACAGACAAAAGGAAGCGAGACTCTCCAAAATCAGCCACCACAGCGTGTCCATCCTCATAGAGCAGAATATTATGACTGTTGAGATCTCTGTGAATGATTGGTTGGGTCAGATTGTGCAGATACTCCATGCCCTTGGCCACATCAATGGCAATGATGAGCTTGGACTGCAGATCAATGATTCTGGATGTAAAGACATCATTAAGTGAACACCTCCTTCCTGCCACTGATCAATGCACACTCCCATCGTTCCAACTCAAACAGATCAATGAGATGATGATCACCTTAAACTGCATATGGAGCACTAAGAAGAAATCAGACACTTATTGGCATTGATGCAGGTCTTAATGTATAAACAGATCTGGGATTGCTTCAAATTTCTCTTCTGGTCACATTTTATGGAAGCTTGTTTCCGCCACGAAATAAAACAATTTAAAAGGTAATTGTGACTTTTTATCTCAAAATCCTAATGACTTTTCTTCTTGCAATTGTGAGTTTACAACTTTTTTCTCAGAATTGCAAGATATTATAATGTCAGAATTGCAACTCACAATTGCGAGTTTATATCTTGCATTTCTGATTCCTTTTCTCAGAACTGTGAGATATAAACTCACAAATGTGAGTTATAAAGTCCAATTCTGAGGGTTAAAAAATAATGTCAGAATTGCAAGATACACATACGCATGTATATACGCATTTCTGACTTTTTTTCTTGCAATTCCGAGTTTATATCTCACAATTCTGACTTTTTTTTGCAATTCTGACTTTTTTCTCGCAATTGCGAGTTTATATTTCACATTTCTGATTTCTTTTCTCAGTATTGTGAGATAACTCACAATTGCGAGTTGTAAAATCCAATTCTGAGGGTAAAAAAAGACTTTTCTCAGAATCCCCAATTCTGACTTTATAACTCGCAATTGTCTGTTATAAAGTCCGAACTGCAAGATATAAACAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73016 lncRNA downstream 9726 3919670 ~ 3919890 (-) True G64119
TU71395 lncRNA downstream 297612 3631538 ~ 3632004 (-) True G62699
TU71377 lncRNA downstream 330581 3598826 ~ 3599035 (-) True G62682
TU71342 lncRNA downstream 491036 3438346 ~ 3438580 (-) True G62650
TU71340 lncRNA downstream 492688 3436698 ~ 3436928 (-) True G62648
TU72977 lncRNA upstream 25733 3957359 ~ 3958683 (-) False G64084
TU72979 lncRNA upstream 25733 3957359 ~ 3958683 (-) True G64084
TU73070 lncRNA upstream 122911 4054537 ~ 4055332 (-) True G64168
TU73071 lncRNA upstream 125591 4057217 ~ 4059152 (-) True G64169
TU73245 lncRNA upstream 286127 4217753 ~ 4220928 (-) True G64332
CI01000010_03914320_03915250.mRNA mRNA downstream 14366 3914252 ~ 3915250 (-) True CI01000010_03914320_03915250
CI01000010_03912179_03913373.mRNA mRNA downstream 16243 3911683 ~ 3913373 (-) True CI01000010_03912179_03913373
CI01000010_03890095_03899058.mRNA mRNA downstream 30558 3890095 ~ 3899058 (-) False CI01000010_03890095_03899058
CI01000010_03787388_03880750.mRNA mRNA downstream 48866 3787388 ~ 3880750 (-) True CI01000010_03787388_03880750
CI01000010_03617450_03619486.mRNA mRNA downstream 310130 3617343 ~ 3619486 (-) True CI01000010_03617450_03619486
CI01000010_03941555_03947042.mRNA mRNA upstream 9929 3941555 ~ 3947042 (-) True CI01000010_03941555_03947042
CI01000010_03961520_03974921.mRNA mRNA upstream 29793 3961419 ~ 3974921 (-) False CI01000010_03961520_03974921
CI01000010_03992093_03992619.mRNA mRNA upstream 59475 3991101 ~ 3993606 (-) True CI01000010_03992093_03992619
CI01000010_04028461_04031710.mRNA mRNA upstream 96671 4028297 ~ 4031710 (-) True CI01000010_04028461_04031710
CI01000010_04153653_04157398.mRNA mRNA upstream 220254 4151880 ~ 4158138 (-) True CI01000010_04153653_04157398
TU72970 other downstream 29705 3899741 ~ 3899911 (-) False G64080
TU72971 other downstream 29705 3899741 ~ 3899911 (-) True G64080
TU71288 other downstream 397964 3531516 ~ 3531652 (-) True G62599
TU70569 other downstream 2384565 1424425 ~ 1545051 (-) True G61965
TU70488 other downstream 2683598 1244469 ~ 1246018 (-) False G61888
TU73142 other upstream 298324 4229950 ~ 4236416 (-) False G64237
TU73132 other upstream 680870 4613485 ~ 4613556 (-) True G64230
TU73495 other upstream 1117529 5049155 ~ 5242926 (-) True G64564
TU73846 other upstream 1984631 5916257 ~ 5917011 (-) True G64877
TU73887 other upstream 2162063 6093689 ~ 6096480 (-) False G64918

Expression Profile