RNA id: TU73071


Basic Information

Item Value
RNA id TU73071
length 949
lncRNA type intronic
GC content 0.38
exon number 2
gene id G64169
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 4057217 ~ 4059152 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAATCTAACCTGGCTGCTGGAGGAGTGGAAAGGAGGAGGAAAGAACAGCAGCACAGATAATGAACAGAAGAGAGTGACCAGCGTGGGAGAGAGAGAGAGAACGATAACAGCGGAGGAAGAGAAGAGCAAAAAAACAGAAAGATCATGAGCGGAGGAGAAGAGGAGAGGAAGATGGGCAGTCAAACGCAGCAGAATAAGCTGAGTTGAGTCGTTGGATACGCCCACATCCTGTAGGAGACCCTGAGGAGAATCTGCCAACAATGTTGAAATCGATTGACTTTTTTTCATGAAAAAGATTTCTCTACAATATCTCCACTTGTGGAGAACCAGATAAATCTGGGAAGCATCCATCATCCTGCTGACAAAAGCAGCTTAGACAAGCATGAATTCAAAGAGTGGCTTCTGCAGGTTAGCCCTGCTGATCTAGCTTGTGGACCAGATAGCAGCTAAAACTGCTGATTGACAGAAGTTCTTCCTTACTAAGTTTGGTTAAACTAGTGTAAAAAAATCTAAAAGGGGTTGAAGGGGACTTATGTTGATGTGTTTAAGGGGGTGCTAGTTCAAATCTGGCTTACGCCCTCATACAATCCCATCCCACTTCTATGTTTCCCTGCATTTTCCTGTCTAATCTATATCAGTGGTTCATAACCTTTTTGACTCCAAGGTCACCCACCCTCCACAACAATAGTCAAAGGCCATACTTTTCCAGTTGTTTATGATTTACTGGATAATGGTTAAGGATAAGAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGTATTTTTACTTATTTTACTAATATTTTAGAGCTCGGCTTAATTACAAAAATGTATATTCATAAAATGTATAAAATGCCAAAGATCCATTTATATGGATTTTCCAGGTCTAGAAATCTTCAAAAAAGAATTTGAGGGGAAGTCTTAAAATAAGAAATATCTTCATTTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73070 lncRNA downstream 1885 4054537 ~ 4055332 (-) True G64168
TU72979 lncRNA downstream 95587 3957359 ~ 3958683 (-) True G64084
TU72977 lncRNA downstream 95652 3957359 ~ 3958683 (-) False G64084
TU73023 lncRNA downstream 125591 3929616 ~ 3931626 (-) True G64126
TU73016 lncRNA downstream 137327 3919670 ~ 3919890 (-) True G64119
TU73245 lncRNA upstream 158601 4217753 ~ 4220928 (-) True G64332
TU73144 lncRNA upstream 172041 4231193 ~ 4236416 (-) True G64237
TU73295 lncRNA upstream 223604 4282756 ~ 4283085 (-) True G64382
TU73187 lncRNA upstream 373755 4432907 ~ 4434141 (-) False CI01000010_04433165_04436747
TU73194 lncRNA upstream 375886 4437197 ~ 4437274 (-) True G64281
CI01000010_04028461_04031710.mRNA mRNA downstream 25507 4028297 ~ 4031710 (-) True CI01000010_04028461_04031710
CI01000010_03992093_03992619.mRNA mRNA downstream 63611 3991101 ~ 3993606 (-) True CI01000010_03992093_03992619
CI01000010_03961520_03974921.mRNA mRNA downstream 82296 3961419 ~ 3974921 (-) False CI01000010_03961520_03974921
CI01000010_03941555_03947042.mRNA mRNA downstream 110175 3941555 ~ 3947042 (-) True CI01000010_03941555_03947042
CI01000010_03914320_03915250.mRNA mRNA downstream 141967 3914252 ~ 3915250 (-) True CI01000010_03914320_03915250
CI01000010_04153653_04157398.mRNA mRNA upstream 92728 4151880 ~ 4158138 (-) True CI01000010_04153653_04157398
CI01000010_04311215_04316218.mRNA mRNA upstream 251582 4310734 ~ 4316671 (-) True CI01000010_04311215_04316218
CI01000010_04356379_04367982.mRNA mRNA upstream 297185 4356337 ~ 4368250 (-) True CI01000010_04356379_04367982
CI01000010_04374856_04376532.mRNA mRNA upstream 315356 4374508 ~ 4376946 (-) True CI01000010_04374856_04376532
CI01000010_04383043_04410672.mRNA mRNA upstream 323719 4382871 ~ 4412332 (-) True CI01000010_04383043_04410672
TU72970 other downstream 157306 3899741 ~ 3899911 (-) False G64080
TU72971 other downstream 157306 3899741 ~ 3899911 (-) True G64080
TU71288 other downstream 525565 3531516 ~ 3531652 (-) True G62599
TU70569 other downstream 2512166 1424425 ~ 1545051 (-) True G61965
TU70488 other downstream 2811199 1244469 ~ 1246018 (-) False G61888
TU73142 other upstream 170798 4229950 ~ 4236416 (-) False G64237
TU73132 other upstream 553344 4613485 ~ 4613556 (-) True G64230
TU73495 other upstream 990003 5049155 ~ 5242926 (-) True G64564
TU73846 other upstream 1857105 5916257 ~ 5917011 (-) True G64877
TU73887 other upstream 2034537 6093689 ~ 6096480 (-) False G64918

Expression Profile