RNA id: TU71679


Basic Information

Item Value
RNA id TU71679
length 201
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G62930
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 4305065 ~ 4305265 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAAACACTTACTACACACACTCATTTGCTTAGCAATCTAAATTATTACCTATAAAAGACTTACATGTTTTTACACTAAACTAATTATAAGTACTAATAACTATTACCCAAACACTAAATGGAGGTTTTGTCATATTTAGCTAACTTCTGGAGACAAATTTGTCCCCAAAGTATATCTAAGTAAACCATGACTGCACTTAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71675 lncRNA upstream 5143 4299693 ~ 4299922 (+) True G62926
TU71674 lncRNA upstream 7438 4297361 ~ 4297627 (+) True G62925
TU71672 lncRNA upstream 13754 4291085 ~ 4291311 (+) True G62923
TU71638 lncRNA upstream 209678 4092045 ~ 4095387 (+) True G62895
TU71636 lncRNA upstream 243875 4054595 ~ 4061190 (+) True G62893
TU71683 lncRNA downstream 1656 4306921 ~ 4326352 (+) True G62934
TU71696 lncRNA downstream 21224 4326489 ~ 4326710 (+) True G62947
TU71697 lncRNA downstream 24493 4329758 ~ 4329998 (+) True G62948
TU71735 lncRNA downstream 89715 4394980 ~ 4482134 (+) True G62980
TU71737 lncRNA downstream 140251 4445516 ~ 4447186 (+) True G62982
CI01000010_04165584_04232583.mRNA mRNA upstream 72482 4165584 ~ 4232583 (+) True CI01000010_04165584_04232583
CI01000010_04046204_04137642.mRNA mRNA upstream 167423 4046204 ~ 4137642 (+) True CI01000010_04046204_04137642
CI01000010_04025764_04026729.mRNA mRNA upstream 277799 4025361 ~ 4027266 (+) True CI01000010_04025764_04026729
CI01000010_04010515_04020837.mRNA mRNA upstream 284167 4010515 ~ 4020898 (+) True CI01000010_04010515_04020837
CI01000010_03952874_03957173.mRNA mRNA upstream 347821 3952874 ~ 3957244 (+) True CI01000010_03952874_03957173
CI01000010_04368541_04374080.mRNA mRNA downstream 63206 4368471 ~ 4374174 (+) True CI01000010_04368541_04374080
CI01000010_04377762_04378990.mRNA mRNA downstream 71882 4377147 ~ 4379082 (+) True CI01000010_04377762_04378990
CI01000010_04437892_04443935.mRNA mRNA downstream 132164 4437429 ~ 4444446 (+) True CI01000010_04437892_04443935
CI01000010_04534309_04549864.mRNA mRNA downstream 228913 4534178 ~ 4549959 (+) True CI01000010_04534309_04549864
CI01000010_04609294_04611679.mRNA mRNA downstream 303924 4609189 ~ 4611710 (+) True CI01000010_04609294_04611679
TU71580 other upstream 365120 3937757 ~ 3939945 (+) True G62856
TU71560 other upstream 411272 3890095 ~ 3893793 (+) True G62838
TU70047 other upstream 973879 3328458 ~ 3331186 (+) True G61480
TU70029 other upstream 1105157 3194155 ~ 3199031 (+) True G61462
TU69273 other upstream 3357521 946794 ~ 946871 (+) True G60842
TU71738 other downstream 142907 4448172 ~ 4449327 (+) True G62983
TU71841 other downstream 335576 4640841 ~ 4653993 (+) False CI01000010_04640858_04683752
TU71842 other downstream 335576 4640841 ~ 4651767 (+) True CI01000010_04640858_04683752
TU72215 other downstream 1390180 5695445 ~ 5707085 (+) False G63403
TU72214 other downstream 1392158 5697423 ~ 5699465 (+) False G63403

Expression Profile