RNA id: TU72189


Basic Information

Item Value
RNA id TU72189
length 477
lncRNA type antisense_over
GC content 0.48
exon number 6
gene id G63386
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 5644656 ~ 5645797 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTAACATGTTGGCAGACATTAAAATATGAGAAACATTCTAATCACAAAGCATGCAGTAATTTTTGAGCAGATTAAATTATACGTCTGTACAATTCCGTCCCACTGACTTTTGGCCCTGATTGACCCTTGACTCCTTTTCCCCCTGGAGGTCCTGAAGATCCTGGTTTTCCCTTCAGACCATGAGGACCCCTAGCTCCTGGCTGACCCACTGAACCCATTTTGCCTCTTGTTCCAGGCTCTCCTTTCTTCCCGCTTGGGCCTTGAATACCAATTGATCCTATCTTCCCAGGGCCCCCTGAATTCCCTTTAAATCCAGGCTCTCCTTTAAGCCCATGCTTTCCACTTTGTCCAACAAATCCTTCTTTTCCTGGCAAACCCGGTAATCCAACAGCACCATTTGGACCTGGAGACCCATTTGTTCCTGCCTCACCAACAAGTCCACGTAGACCTTTGTCGCCCTTATCACCAGCTTCTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72186 lncRNA upstream 1579 5642877 ~ 5643077 (+) True G63384
TU72133 lncRNA upstream 6424 5634187 ~ 5638232 (+) True G63332
TU72129 lncRNA upstream 52804 5591376 ~ 5591852 (+) True G63328
TU72160 lncRNA upstream 65470 5570171 ~ 5579186 (+) True G63359
TU71982 lncRNA upstream 626533 5015102 ~ 5018123 (+) True CI01000010_05012978_05018219
TU72194 lncRNA downstream 13422 5659219 ~ 5659439 (+) True G63390
TU72210 lncRNA downstream 45638 5691435 ~ 5694008 (+) True G63399
TU72217 lncRNA downstream 49648 5695445 ~ 5698465 (+) False G63403
TU72220 lncRNA downstream 69919 5715716 ~ 5717250 (+) True G63405
TU72261 lncRNA downstream 235398 5881195 ~ 5881600 (+) True G63442
CI01000010_05523602_05535371.mRNA mRNA upstream 108964 5523516 ~ 5535692 (+) True CI01000010_05523602_05535371
CI01000010_05494740_05504597.mRNA mRNA upstream 139395 5493967 ~ 5505261 (+) True CI01000010_05494740_05504597
CI01000010_05477048_05482911.mRNA mRNA upstream 161355 5476525 ~ 5483301 (+) True CI01000010_05477048_05482911
CI01000010_05414058_05426498.mRNA mRNA upstream 217969 5414058 ~ 5426687 (+) True CI01000010_05414058_05426498
CI01000010_05359191_05385419.mRNA mRNA upstream 258972 5359191 ~ 5385684 (+) True CI01000010_05359191_05385419
CI01000010_05789479_05790006.mRNA mRNA downstream 142535 5788332 ~ 5790204 (+) False CI01000010_05789479_05790006
CI01000010_05819188_05855120.mRNA mRNA downstream 173391 5819188 ~ 5855163 (+) True CI01000010_05819188_05855120
CI01000010_05859214_05887437.mRNA mRNA downstream 213417 5859214 ~ 5888267 (+) True CI01000010_05859214_05887437
CI01000010_05902969_05911426.mRNA mRNA downstream 257172 5902969 ~ 5912165 (+) True CI01000010_05902969_05911426
CI01000010_06014142_06037829.mRNA mRNA downstream 368345 6014142 ~ 6038450 (+) True CI01000010_06014142_06037829
TU71841 other upstream 990663 4640841 ~ 4653993 (+) False CI01000010_04640858_04683752
TU71842 other upstream 992889 4640841 ~ 4651767 (+) True CI01000010_04640858_04683752
TU71738 other upstream 1195329 4448172 ~ 4449327 (+) True G62983
TU71580 other upstream 1704711 3937757 ~ 3939945 (+) True G62856
TU71560 other upstream 1750863 3890095 ~ 3893793 (+) True G62838
TU72215 other downstream 49648 5695445 ~ 5707085 (+) False G63403
TU72214 other downstream 51626 5697423 ~ 5699465 (+) False G63403
TU72216 other downstream 58284 5704081 ~ 5707085 (+) True G63403
TU72219 other downstream 62174 5707971 ~ 5717250 (+) False G63405
TU72237 other downstream 111156 5756953 ~ 5757934 (+) True G63420

Expression Profile