RNA id: TU72194


Basic Information

Item Value
RNA id TU72194
length 221
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G63390
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 5659219 ~ 5659439 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTTATCTTTTCTTGTTCTCTCTCTCTCAGTGCAGTACTAGCTTCAACCCTGGGACTCCCAGGTTGATGAAAAGGTATTCGCTGAGTAACTGCTACGGGTTGTGTTTGCATTGGTGTCGGTCGACTAGTCGCTCTGAATTCTTTATTCTTCTCTTTTGACTTTACTTTTCTGACTGAGGTGCTGCTGGTGCTGGTTTCCATTACGCTAGACAGGTTTTGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72189 lncRNA upstream 13422 5644656 ~ 5645797 (+) True G63386
TU72186 lncRNA upstream 16142 5642877 ~ 5643077 (+) True G63384
TU72133 lncRNA upstream 20987 5634187 ~ 5638232 (+) True G63332
TU72129 lncRNA upstream 67367 5591376 ~ 5591852 (+) True G63328
TU72160 lncRNA upstream 80033 5570171 ~ 5579186 (+) True G63359
TU72210 lncRNA downstream 31996 5691435 ~ 5694008 (+) True G63399
TU72217 lncRNA downstream 36006 5695445 ~ 5698465 (+) False G63403
TU72220 lncRNA downstream 56277 5715716 ~ 5717250 (+) True G63405
TU72261 lncRNA downstream 221756 5881195 ~ 5881600 (+) True G63442
TU72262 lncRNA downstream 223329 5882768 ~ 5883651 (+) True G63443
CI01000010_05523602_05535371.mRNA mRNA upstream 123527 5523516 ~ 5535692 (+) True CI01000010_05523602_05535371
CI01000010_05494740_05504597.mRNA mRNA upstream 153958 5493967 ~ 5505261 (+) True CI01000010_05494740_05504597
CI01000010_05477048_05482911.mRNA mRNA upstream 175918 5476525 ~ 5483301 (+) True CI01000010_05477048_05482911
CI01000010_05414058_05426498.mRNA mRNA upstream 232532 5414058 ~ 5426687 (+) True CI01000010_05414058_05426498
CI01000010_05359191_05385419.mRNA mRNA upstream 273535 5359191 ~ 5385684 (+) True CI01000010_05359191_05385419
CI01000010_05789479_05790006.mRNA mRNA downstream 128893 5788332 ~ 5790204 (+) False CI01000010_05789479_05790006
CI01000010_05819188_05855120.mRNA mRNA downstream 159749 5819188 ~ 5855163 (+) True CI01000010_05819188_05855120
CI01000010_05859214_05887437.mRNA mRNA downstream 199775 5859214 ~ 5888267 (+) True CI01000010_05859214_05887437
CI01000010_05902969_05911426.mRNA mRNA downstream 243530 5902969 ~ 5912165 (+) True CI01000010_05902969_05911426
CI01000010_06014142_06037829.mRNA mRNA downstream 354703 6014142 ~ 6038450 (+) True CI01000010_06014142_06037829
TU71841 other upstream 1005226 4640841 ~ 4653993 (+) False CI01000010_04640858_04683752
TU71842 other upstream 1007452 4640841 ~ 4651767 (+) True CI01000010_04640858_04683752
TU71738 other upstream 1209892 4448172 ~ 4449327 (+) True G62983
TU71580 other upstream 1719274 3937757 ~ 3939945 (+) True G62856
TU71560 other upstream 1765426 3890095 ~ 3893793 (+) True G62838
TU72215 other downstream 36006 5695445 ~ 5707085 (+) False G63403
TU72214 other downstream 37984 5697423 ~ 5699465 (+) False G63403
TU72216 other downstream 44642 5704081 ~ 5707085 (+) True G63403
TU72219 other downstream 48532 5707971 ~ 5717250 (+) False G63405
TU72237 other downstream 97514 5756953 ~ 5757934 (+) True G63420

Expression Profile