Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU77769 |
| length | 376 |
| RNA type | TUCP |
| GC content | 0.45 |
| exon number | 2 |
| gene id | G68264 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000012 |
| NCBI id | null |
| chromosome length | 13770000 |
| location | 192246 ~ 205774 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU77876 | lncRNA | upstream | 2190 | 189856 ~ 190056 (+) | True | G68361 |
| TU77868 | lncRNA | upstream | 10044 | 178487 ~ 182202 (+) | True | G68353 |
| TU77867 | lncRNA | upstream | 16180 | 175827 ~ 176066 (+) | True | G68352 |
| TU77837 | lncRNA | upstream | 30185 | 161599 ~ 162061 (+) | True | G68329 |
| TU77850 | lncRNA | upstream | 56329 | 130927 ~ 135917 (+) | True | G68339 |
| TU77880 | lncRNA | downstream | 38261 | 244035 ~ 244771 (+) | True | G68364 |
| TU77772 | lncRNA | downstream | 92845 | 298619 ~ 306993 (+) | True | G68267 |
| TU77778 | lncRNA | downstream | 103000 | 308774 ~ 309101 (+) | True | G68273 |
| TU77891 | lncRNA | downstream | 109597 | 315371 ~ 315665 (+) | True | G68373 |
| TU77777 | lncRNA | downstream | 138886 | 344660 ~ 345058 (+) | True | G68272 |
| CI01000012_00030966_00032941.mRNA | mRNA | upstream | 159191 | 28818 ~ 33055 (+) | True | CI01000012_00030966_00032941 |
| CI01000012_00318129_00318595.mRNA | mRNA | downstream | 112355 | 318129 ~ 319418 (+) | True | CI01000012_00318129_00318595 |
| CI01000012_00502185_00516358.mRNA | mRNA | downstream | 294377 | 500151 ~ 516908 (+) | True | CI01000012_00502185_00516358 |
| CI01000012_00593086_00594741.mRNA | mRNA | downstream | 386352 | 592126 ~ 595465 (+) | True | CI01000012_00593086_00594741 |
| CI01000012_00644021_00646785.mRNA | mRNA | downstream | 438247 | 644021 ~ 647075 (+) | True | CI01000012_00644021_00646785 |
| CI01000012_00886127_00889703.mRNA | mRNA | downstream | 679346 | 885120 ~ 890337 (+) | True | CI01000012_00886127_00889703 |
| TU77788 | other | upstream | 131714 | 26390 ~ 60532 (+) | True | G68282 |
| TU78227 | other | downstream | 329792 | 535566 ~ 535953 (+) | True | G68660 |
| TU78303 | other | downstream | 477749 | 683523 ~ 684578 (+) | False | G68725 |
| TU78307 | other | downstream | 477749 | 683523 ~ 684696 (+) | False | G68725 |
| TU78309 | other | downstream | 477749 | 683523 ~ 684856 (+) | False | G68725 |
| TU78310 | other | downstream | 477749 | 683523 ~ 684788 (+) | True | G68725 |
