RNA id: CI01000012_00318129_00318595.mRNA



Basic Information


Item Value
RNA id CI01000012_00318129_00318595.mRNA
length 1290
RNA type mRNA
GC content 0.37
exon number 1
gene id CI01000012_00318129_00318595
representative True

Chromosome Information


Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 318129 ~ 319418 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACACTGGTGCCAACACAGACATCTCTAAGCAGATCACACCCTCACCCCTCTCACCTCTCACTAGACTGTACATTTACGCTCTACATGGGTGCCTCTGTGAGGTGGCATTCACAGCATCCTGGGATTGGTACTACACCCATGACCACAGACTAGCAGGACACACAAGCCTTTGGGCACTCCTTATATACAGCTCTGCCATCTTCTGCATAGAAGGTCTAAGTGTGACGCTGCAGCAGAAACACTGCCCACTACCAGTCAGGCTGACTGTCTACACTCTCTTCATCTATCTATGGGAATTTAGCTGGGGGTATCTGCTCAGGCTTTTTGGGGCATGTCCTTGGGACTATTCAGAATTTAGGTTTAACTTCATAGGTCTGGTCACACTTGAATATGCTGTTCCCTGGGCGTTGGCGGCACTTATAGCTGAAAAACATGTTATTAGGAACACTCTGAAGATACGGCTATAGATAAAAGCTGAGTGTATAAAAAGATAACTCACTGCACACATAAACTGTTGAACAGAAACATTTTATAAATCTTTGACTCTGTATTGGAATAGAGTGTTTAGTAGGCCTGTAAATGCTACAGTGCTAATAGAGTGCAACAGCCGGGTTCTGGAAGCCAAAATCCCATTCATTGTCTCTAAAGGGAAATTTAAAAGATAAATAAATAACTTATGAACTTTTCGAGACAGACCTACTGTGAGTTAAAAGGTTGTTAATCGCTGGTATATGCTTTTACTGAAGCCATCAGTTTGCATTATTTCAACTTATTTTTTAAATAATCCTTTATAATAGCAGAATTCCTGGTGAAAACTAAGTTTCTTAAAAGAAATCTTCACTAATTAGAGAACTGAAACAAGGTCATTGTAGCAAAAGATCTCTTTAGTGCCCATCCTCTCCCACAAAGCACTTGCCACTCCCACACACTACAGACACTCTGCTTAACTATTTGTATATGCATATTTTGCAATGCAATATGTTGTTTCTGTATACACAATCAACATCTTTAAATGAATAGTTTTATATTTATGTTATTTTTAATTCCATTATGTAATTTGCAATGCTTGGGATTGTAGTTTTAAATACTTTTTGCTTCAAATCAAAGTTTGTAGTGTTATTATTTACCTTATAGCTGTTTGGTTTGGTTCATGGCTTTTAACTCTTTAATGAAGACTTTATTGAAAGTCCCTAGAAACAAAGATAAAGCTCAATTTGAATGCCAGGAAATTGCAAATAATAATAATAATATTAATAATAATAATAATAATAATAATAAATTATATGTATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU77891 lncRNA upstream 2464 315371 ~ 315665 (+) True G68373
TU77778 lncRNA upstream 9028 308774 ~ 309101 (+) True G68273
TU77772 lncRNA upstream 11136 298619 ~ 306993 (+) True G68267
TU77880 lncRNA upstream 73358 244035 ~ 244771 (+) True G68364
TU77768 lncRNA upstream 122548 192246 ~ 192345 (+) False G68264
TU77777 lncRNA downstream 25242 344660 ~ 345058 (+) True G68272
TU77913 lncRNA downstream 72336 391754 ~ 392069 (+) True G68395
TU77915 lncRNA downstream 76451 395869 ~ 396136 (+) True G68397
TU77921 lncRNA downstream 96170 415588 ~ 416059 (+) True G68402
TU77943 lncRNA downstream 114103 433521 ~ 433762 (+) True G68409
CI01000012_00194370_00195347.mRNA mRNA upstream 122453 193903 ~ 195676 (+) False CI01000012_00194370_00195347
CI01000012_00030966_00032941.mRNA mRNA upstream 285074 28818 ~ 33055 (+) True CI01000012_00030966_00032941
CI01000012_00502185_00516358.mRNA mRNA downstream 180733 500151 ~ 516908 (+) True CI01000012_00502185_00516358
CI01000012_00593086_00594741.mRNA mRNA downstream 272708 592126 ~ 595465 (+) True CI01000012_00593086_00594741
CI01000012_00644021_00646785.mRNA mRNA downstream 324603 644021 ~ 647075 (+) True CI01000012_00644021_00646785
CI01000012_00886127_00889703.mRNA mRNA downstream 565702 885120 ~ 890337 (+) True CI01000012_00886127_00889703
CI01000012_00979848_00986445.mRNA mRNA downstream 660430 979848 ~ 986745 (+) True CI01000012_00979848_00986445
TU77769 other upstream 112355 192246 ~ 205774 (+) True G68264
TU77788 other upstream 257597 26390 ~ 60532 (+) True G68282
TU78227 other downstream 216148 535566 ~ 535953 (+) True G68660
TU78303 other downstream 364105 683523 ~ 684578 (+) False G68725
TU78307 other downstream 364105 683523 ~ 684696 (+) False G68725
TU78309 other downstream 364105 683523 ~ 684856 (+) False G68725
TU78310 other downstream 364105 683523 ~ 684788 (+) True G68725

Expression Profile