RNA id: CI01000012_00382850_00384215.mRNA


Basic Information

Item Value
RNA id CI01000012_00382850_00384215.mRNA
length 2280
RNA type mRNA
GC content 0.43
exon number 3
gene id CI01000012_00382850_00384215
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 381711 ~ 384426 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTGTAATAGTGTCACTGACCTTTGAACAATACCTTCGGGAGGTTCTGTTGAGAATACAGACAGCAGGTCTCTCTCTAAAGCTGAACAAATGTCAGTTCTGTCTAAGTGAGCTCATATTCTTTGGCTACCGTGTCATGCCAGAGGGTATATCCCCAGACCCAGCAAAAGTAAAGGCGGTGGCCGAGTTCAGAACACCAAAGGACACAAAGGATGTCAGAGGACTCCTTGGCCTTACAGGCTATTGCCGATGCTTCATACCTGGCTGGTAAAGCAGAACCACTTTTGCGTCTCACCAGGAAAGAAACACCGTTCTGCTCAGATGAAAGCTGCCAGGCTGCTATGGATTTCTTGACAAAGTGTCTCACATCAGCGCCAATCTTGTGTTTTCCAAATTTCACATGGCCATTCTATATACACACAGACACTTGCGACCTGGGTCTTGGGGTGTCCTTAATGCAAAAAGACGACATGGGACAAGATGTTGTTGTGGCCTTTGCAAGCAGGACTCTACATAAAGCTGAGAAACCCTACTCAGTGCCTGAAAAGGAAAGTTTAGGAGTGATTTGGGCTCTGGAGTACTTTAGACCCTATGTAGAGGGCCACCATGTGATGGACTTTGATTTTAGTATTGTGCATAAGCCAGGTGTTCAAAACAAGGTCCCAGATGCTTTGTCCTGCAACCCAATTCAATGCGAGGCTACCCCAATAGACATTCTGCCAGATTATGCAATCATTGGGGGGATGGATCTCCATAGCCTGTCCTCAATCGTGCTGACAGACAAAGCAAAGTTGAGGCAATTACAGGAAAATTACCTGGTGAATGGAAATGAGTACATTCTTGCATTTGTCGACTACTTCTCAAAGTGGGTAGAAGTAAATGCAGTCAGAACAGCGACAGCGCAAGTTGCTTCAAGTAAATGTCTGAGCGAAATCTTTGCCAGACACAGTGCACCGACTTACCTGATTTCAGACCACGGCGCGCCATTTGTGAGTAACCTCTTCGAGTATGTGGTGGCCACCCTGGGTACAGAACACAGGTTGACTACGGCATATCACCCACAGACAAACGCTACGGAAATGGTGAACCGTACCTTGAAAACAGCCATTCGTGCATATATGGGGGACAAACACACCTCATAGGACAGATACATACCTCAGATTTGTTTCGCTCTTCGTACTGCACCACATGAGAGTACAGACCTGTCACCGTTAATGATGTTATATGAACGTGAGCTTGAGACTCCATTTGATTTGGTCACACAACCGAATGTTGATGGAATGGATAACCCGGATGTGACATAACCAGAGAACTTCAGCGTCTTCCTTACAAGATACTCATGATCATGCCAGAGTAGCTCTAGAGGAAGGACAAAAATATAGGAAATGATACTATGACCTAAAACGGCGTTCAGTTTCTTATGTTGTGGATGATCTAGTTAGAGTGAAAACACACCCAAAGTCTGATGCAATAGCAAACTTTATTCAGCCAAGCTGGCTCCAGTATACTTTGGTCCATGCAGGGTCTCAAAAGTACTGTCTGAAGTTAACTACAGACTGGAAAAAGTTGATACTGGAGATGTTGGTGTGTTTCACGTTGTAAATTTTCAGCCCTTTCACTCATGGTGAAACAAAGGTGTTGATTGTCACTTGTTTATTGACAAATGTTCAAGGTTTGATGTTTTTGAAAAAAAAAAAAAAAAAAAAATCCACAAAAATGTATTCCATATGTGGGTGTTGCACACAGTTGTTTTGTTTTATTGAACTTAAGGGCAATGTGCGGACTTGTAGGACTGTATTGTTTGTGCATTGTTTTTGTTTTTTCTCACCCTGTAACAGCTTTTCAACTGTGGCATGTATGTATGGTTGTTAAGTGAAACAGTAATGCTCCTTGGTTGTGTACGTCTGGGGTCAGCCTTTATTTGACAGGGGGGAATCTGTAACAAGTAGAATTAGGTAGAATTAGGAACACATTCTCTTACTCCCTCACTGATGAGTGGGCAGTCTGTAGAAGGAGCGCGAGCTGTGAACATCGCATGTATGCATGTAAAGCATGTTTATATTGCTCTTTACCCTGTTTTATTTCTGTTCAGTAACGCAGTTGTTAGTGGAGTGTTTTGCAAACTACCCCATGTGTGCATGGGATCAACGACGCTGATTATAAAGAACCACTGTGGAATATCAGATACGAGTCTTTGCTTACACTTGTCTACAAACATTCAGGCAAGCTATCCGGCCTCTCTGTTTAAAGCGTTGCATCTTACACCAGCAACAAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78122 lncRNA downstream 55826 325635 ~ 325885 (-) True G68571
TU78015 lncRNA downstream 61369 319929 ~ 320342 (-) True G68476
TU78120 lncRNA downstream 61930 319483 ~ 319781 (-) True G68569
TU78112 lncRNA downstream 62594 318428 ~ 319117 (-) True G68561
TU78119 lncRNA downstream 64543 316940 ~ 317168 (-) True G68568
TU78133 lncRNA upstream 7335 391761 ~ 392241 (-) True G68582
TU78136 lncRNA upstream 14145 398571 ~ 398906 (-) True G68585
TU78150 lncRNA upstream 17104 401530 ~ 401913 (-) False G68587
TU78147 lncRNA upstream 19409 403835 ~ 408635 (-) False G68587
TU78148 lncRNA upstream 19409 403835 ~ 408635 (-) True G68587
CI01000012_00340814_00363240.mRNA mRNA downstream 18471 340665 ~ 363240 (-) True CI01000012_00340814_00363240
CI01000012_00260363_00261340.mRNA mRNA downstream 120203 260296 ~ 261508 (-) True CI01000012_00260363_00261340
CI01000012_00223417_00223713.mRNA mRNA downstream 157562 223215 ~ 224149 (-) True CI01000012_00223417_00223713
CI01000012_00178282_00181473.mRNA mRNA downstream 198699 178182 ~ 183012 (-) False CI01000012_00178282_00181473
CI01000012_00176813_00177864.mRNA mRNA downstream 203785 176628 ~ 177926 (-) False CI01000012_00176813_00177864
CI01000012_00427641_00472235.mRNA mRNA upstream 43147 427573 ~ 472577 (-) True CI01000012_00427641_00472235
CI01000012_00520655_00552630.mRNA mRNA upstream 135713 520139 ~ 553820 (-) True CI01000012_00520655_00552630
CI01000012_00647774_00648451.mRNA mRNA upstream 263160 647586 ~ 648945 (-) True CI01000012_00647774_00648451
CI01000012_00686760_00686993.mRNA mRNA upstream 302095 686521 ~ 686993 (-) True CI01000012_00686760_00686993
CI01000012_00689933_00695237.mRNA mRNA upstream 304668 689094 ~ 695264 (-) True CI01000012_00689933_00695237
TU78086 other downstream 201749 179563 ~ 179962 (-) True CI01000012_00178282_00181473
TU78856 other upstream 181037 565463 ~ 566956 (-) True G69150
TU78867 other upstream 203178 587604 ~ 588015 (-) True G69161
TU79003 other upstream 345494 729920 ~ 730465 (-) True G69277
TU79074 other upstream 390938 775364 ~ 775746 (-) False G69332
TU79075 other upstream 390938 775364 ~ 775879 (-) False G69332

Expression Profile